Factsheet for Solyc12g095760.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular, nucleus, cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc01g080930.2.1
Solyc01g094090.2.1
Solyc01g108790.1.1
Solyc01g108800.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20950.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT1G20950.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT1G20950.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT1G20950.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT1G20950.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT1G20950.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT1G20950.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT1G20950.1	Solyc01g080930.2.1	AT5G65940.1	21798944
AT1G20950.1	Solyc01g094090.2.1	AT5G65940.1	21798944
AT1G20950.1	Solyc01g108790.1.1	AT5G65940.1	21798944
AT1G20950.1	Solyc01g108800.2.1	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075360	Potato	cytosol	98.87	98.87
Solyc04g082880.2.1	Tomato	cytosol, nucleus, plastid, unclear	91.25	91.4
VIT_18s0122g00510.t01	Wine grape	cytosol	88.65	88.8
KRH49514	Soybean	cytosol, endoplasmic reticulum, nucleus	84.77	84.77
KRG89187	Soybean	endoplasmic reticulum	84.28	84.28
EES05627	Sorghum	cytosol	82.82	82.95
Os02t0714200-01	Rice	cytosol, plasma membrane	82.5	82.5
Bra025858.1-P	Field mustard	cytosol	82.5	82.23
CDY67022	Canola	cytosol	82.5	82.23
CDY67203	Canola	cytosol	82.5	82.23
AT1G20950.1	Thale cress	cytosol	81.69	82.08
Zm00001d017830_P001	Maize	cytosol	82.17	82.04
AT1G76550.1	Thale cress	cytosol	81.85	81.85
TraesCS6D01G259500.1	Wheat	golgi	81.69	81.82
Bra015734.1-P	Field mustard	cytosol	81.69	81.69
CDX87587	Canola	cytosol	81.69	81.69
TraesCS6B01G307200.1	Wheat	cytosol	81.52	81.66
CDX88295	Canola	cytosol	81.52	81.52
CDY33660	Canola	cytosol	78.93	81.44
CDX96611	Canola	cytosol	78.61	81.1
TraesCS6A01G279100.2	Wheat	cytosol	76.34	81.07
Os06t0326400-01	Rice	cytosol, plasma membrane, plastid	80.55	79.9
OQU76351	Sorghum	cytosol	79.42	78.91
HORVU6Hr1G070270.5	Barley	cytosol	81.85	77.45
TraesCS7D01G228500.1	Wheat	cytosol	76.34	77.09
TraesCS7B01G193600.1	Wheat	cytosol	76.34	77.09
TraesCS7A01G226000.2	Wheat	cytosol	76.34	77.09
Zm00001d051629_P003	Maize	cytosol	76.99	76.12
Zm00001d045919_P001	Maize	mitochondrion	57.37	74.37
HORVU7Hr1G047000.11	Barley	cytosol	76.01	70.31
TraesCS5A01G072700.2	Wheat	cytosol, golgi	67.91	67.47
HORVU5Hr1G019030.9	Barley	cytosol	67.75	67.2
Zm00001d032386_P003	Maize	cytosol	66.61	66.5
Os09t0298100-00	Rice	plastid	66.61	66.29
KXG34347	Sorghum	cytosol	66.13	66.02
Os08t0345700-01	Rice	extracellular	65.96	65.96
KXG35340	Sorghum	cytosol	66.29	64.82
OQU80257	Sorghum	cytosol	55.27	63.62
Zm00001d020006_P001	Maize	cytosol	55.59	63.05
TraesCS5B01G078300.1	Wheat	golgi	67.75	62.95
TraesCS5D01G085500.2	Wheat	golgi	67.59	62.8
GSMUA_AchrUn_...	Banana	cytosol	13.45	61.48
Zm00001d035883_P001	Maize	mitochondrion	8.75	56.25
Zm00001d004479_P001	Maize	mitochondrion	16.86	53.61
GSMUA_AchrUn_...	Banana	cytosol	8.43	52.0
Zm00001d015529_P001	Maize	mitochondrion	14.75	50.28
Zm00001d008809_P001	Maize	cytosol	19.29	50.21
Zm00001d021503_P001	Maize	cytosol	23.01	49.31
Zm00001d032792_P001	Maize	cytosol	8.91	47.01
Zm00001d043564_P001	Maize	cytosol	22.37	46.15
Zm00001d003637_P001	Maize	cytosol	4.7	46.03
Solyc04g026340.1.1	Tomato	cytosol	6.32	40.21
Zm00001d003638_P001	Maize	mitochondrion	9.08	39.72
Zm00001d036537_P007	Maize	cytosol	8.1	39.68
Solyc07g049280.2.1	Tomato	nucleus, unclear	34.68	38.63
Solyc02g081160.2.1	Tomato	plastid	34.36	37.26
Zm00001d037466_P002	Maize	cytosol	6.32	32.5
Zm00001d013450_P001	Maize	cytosol, plastid	13.13	27.84

Protein Annotations

KEGG:00010+2.7.1.11	KEGG:00030+2.7.1.11	KEGG:00051+2.7.1.11	KEGG:00052+2.7.1.11	KEGG:00680+2.7.1.11	Gene3D:1.10.10.480
MapMan:2.1.1.1.2	Gene3D:3.40.50.450	Gene3D:3.40.50.460	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003872	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0046835	GO:GO:0046872	GO:GO:0047334	GO:GO:0061615	UniProt:K4DH49
HAMAP:MF_01980	PFAM:PF00365	PIRSF:PIRSF005677	InterPro:PKF_sf	PANTHER:PTHR43650	PANTHER:PTHR43650:SF2
InterPro:PfpB_PPi_PFK	InterPro:Phosphofructokinase_dom	SUPFAM:SSF53784	EnsemblPlantsGene:Solyc12g095760.1	EnsemblPlants:Solyc12g095760.1.1	TIGRFAMs:TIGR02477
UniParc:UPI00027699FE	SEG:seg	:	:	:	:

Description

Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [Source:UniProtKB/TrEMBL;Acc:K4DH49]

Coordinates

chr12:-:64890894..64897525

Molecular Weight (calculated)

67271.0 Da

IEP (calculated)

7.524

GRAVY (calculated)

-0.153

Length

617 amino acids

Sequence
(BLAST)

001: MDADYGIARE LSDLQKLRSQ YQPELPPCLQ GTTVRVELGD ATTAADPSGE HVISRSFPHT YGQPLAHFLR ATAKVSDAQI ITEHPAKRVG IVFCGRQSPG
101: GHNVIWGIHD ALKIHNPNST LLGFLGGSEG LFAQKTLEIT NDILATYKNQ GGYDMLGRTK DQIRTTEQVN AAMAACKALK LDALIIIGGV TSNTDAAQLA
201: ETFAEAKCQT KVVGVPVTLN GDLKNQFVET NVGFDTICKV NSQLISNMCT DALSAEKYYY FIRLMGRKAS HVALECTLQS HPNMVILGEE VSASKLTLFD
301: ITNKICDTVQ ARAEQDKNHG VILLPEGLIE SIPEVYALLQ EIHGLLKQGV SADKISSQLS PWASALFEFL PPFIKKQLLL HPESDDSAQL SQIETEKLLA
401: HLVETEMNKR LKEGTYKGKK FNAICHFFGY QARGSLPSKF DCDYAYVLGH VCYHILAAGL NGYMATLTNL KNPVNKWRCG AAPITAMMSV KRYGRGPGKA
501: SLGKPAVHPA TVDLKGKSYE LLSQNATKFL LDDVYRNPGP LQFDGPGADA KAITLCVEDQ DYMGRIKKLQ EYLDKVRTIV KPGCSQDVLK AALSAMSSVT
601: EILSVMASPS SNANTPF

Best Arabidopsis Sequence Match ( AT1G76550.1 )
(BLAST)

001: MDSDFGIPRE LSPLQQLRSQ YHPELPPCLQ GTTVRVELGD GTTVAKAGDA HIIARAFPHT LGQPLAHFLR ATAKVADAQI ITEHPVKRVG IVFCGRQAPG
101: GHNVVWGLYE ALKVHNAKNT LLGFLGGSEG LFAQKTLEIT DEVLQTYKNQ GGYDMLGRTK DQIRTTEQVN AALKACTDLK LDSLVIIGGV TSNTDAAHLA
201: EFFAEAKCST KVVGVPVTIN GDLKNQFVEA NVGFDTTCKV NSQLISNICT DALSAEKYYY FVRLMGRKHS HVALECTLQS HPNMVILGEE VTASKLTIFD
301: IIKQICDAVQ ARAEQDKNHG VILIPEGLVE SIPELYALLK EIHGLLKEGV QVDNISTQLS SWSSALFEFL PPFIKKQLLL HPESDDSAQL SQIETEKLLA
401: YLVETEMNKR LKEGTYKGKK FNAICHFFGY QARGSLPSKF DCDYAYVLGH VCYHILAAGL NGYMATVTNL KSPVNKWKCG AAPISAMMTV KRWSQNSGST
501: TIGRPVIHPA SVDLKGKAYD LLRQNAQKFL MEDMYRNPGP VQYDGPGADA KAVSLCVEDQ DYMGKIKKLQ EYLDQVRTIV KPGCSQDVLK AALSVMASVT
601: DVLTTISSSS TSGQQFA

Arabidopsis Description

PFP-ALPHA2Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.