Factsheet for Solyc04g082880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc01g080930.2.1
Solyc01g094090.2.1
Solyc01g108790.1.1
Solyc01g108800.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20950.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT1G20950.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT1G20950.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT1G20950.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT1G20950.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT1G20950.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT1G20950.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT1G20950.1	Solyc01g080930.2.1	AT5G65940.1	21798944
AT1G20950.1	Solyc01g094090.2.1	AT5G65940.1	21798944
AT1G20950.1	Solyc01g108790.1.1	AT5G65940.1	21798944
AT1G20950.1	Solyc01g108800.2.1	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025919	Potato	cytosol	98.86	98.86
Solyc12g095760.1.1	Tomato	cytosol, extracellular, nucleus, unclear	91.4	91.25
VIT_18s0122g00510.t01	Wine grape	cytosol	87.99	87.99
KRH49514	Soybean	cytosol, endoplasmic reticulum, nucleus	83.6	83.47
KRG89187	Soybean	endoplasmic reticulum	83.12	82.98
AT1G76550.1	Thale cress	cytosol	82.95	82.82
Bra015734.1-P	Field mustard	cytosol	82.95	82.82
CDX87587	Canola	cytosol	82.95	82.82
CDX88295	Canola	cytosol	82.95	82.82
AT1G20950.1	Thale cress	cytosol	82.31	82.57
CDY67203	Canola	cytosol	82.95	82.55
Bra025858.1-P	Field mustard	cytosol	82.95	82.55
CDY67022	Canola	cytosol	82.63	82.23
CDY33660	Canola	cytosol	79.55	81.94
CDX96611	Canola	cytosol	79.55	81.94
Os02t0714200-01	Rice	cytosol, plasma membrane	81.82	81.69
EES05627	Sorghum	cytosol	81.17	81.17
Zm00001d017830_P001	Maize	cytosol	80.84	80.58
TraesCS6D01G259500.1	Wheat	golgi	80.36	80.36
TraesCS6B01G307200.1	Wheat	cytosol	80.19	80.19
TraesCS6A01G279100.2	Wheat	cytosol	75.0	79.52
Os06t0326400-01	Rice	cytosol, plasma membrane, plastid	80.19	79.42
OQU76351	Sorghum	cytosol	78.9	78.26
TraesCS7B01G193600.1	Wheat	cytosol	76.14	76.76
TraesCS7A01G226000.2	Wheat	cytosol	76.14	76.76
TraesCS7D01G228500.1	Wheat	cytosol	75.97	76.6
HORVU6Hr1G070270.5	Barley	cytosol	80.52	76.07
Zm00001d051629_P003	Maize	cytosol	75.16	74.2
Zm00001d045919_P001	Maize	mitochondrion	57.14	73.95
HORVU7Hr1G047000.11	Barley	cytosol	75.81	70.02
TraesCS5A01G072700.2	Wheat	cytosol, golgi	66.72	66.18
HORVU5Hr1G019030.9	Barley	cytosol	66.4	65.76
Zm00001d032386_P003	Maize	cytosol	65.75	65.53
Os09t0298100-00	Rice	plastid	65.42	65.0
KXG34347	Sorghum	cytosol	65.1	64.89
Os08t0345700-01	Rice	extracellular	64.94	64.83
KXG35340	Sorghum	cytosol	65.58	64.03
OQU80257	Sorghum	cytosol	54.38	62.5
Zm00001d020006_P001	Maize	cytosol	54.55	61.76
TraesCS5D01G085500.2	Wheat	golgi	66.56	61.75
TraesCS5B01G078300.1	Wheat	golgi	66.56	61.75
GSMUA_AchrUn_...	Banana	cytosol	13.47	61.48
Zm00001d035883_P001	Maize	mitochondrion	9.09	58.33
Zm00001d004479_P001	Maize	mitochondrion	16.88	53.61
GSMUA_AchrUn_...	Banana	cytosol	8.28	51.0
Zm00001d021503_P001	Maize	cytosol	23.54	50.35
Zm00001d008809_P001	Maize	cytosol	19.32	50.21
Zm00001d015529_P001	Maize	mitochondrion	14.12	48.07
Zm00001d003637_P001	Maize	cytosol	4.71	46.03
Zm00001d043564_P001	Maize	cytosol	22.08	45.48
Zm00001d032792_P001	Maize	cytosol	8.44	44.44
Solyc04g026340.1.1	Tomato	cytosol	6.33	40.21
Zm00001d003638_P001	Maize	mitochondrion	9.09	39.72
Zm00001d036537_P007	Maize	cytosol	8.12	39.68
Solyc07g049280.2.1	Tomato	nucleus, unclear	34.09	37.91
Solyc02g081160.2.1	Tomato	plastid	33.44	36.2
Zm00001d037466_P002	Maize	cytosol	6.33	32.5
Zm00001d013450_P001	Maize	cytosol, plastid	12.5	26.46

Protein Annotations

KEGG:00010+2.7.1.11	KEGG:00030+2.7.1.11	KEGG:00051+2.7.1.11	KEGG:00052+2.7.1.11	KEGG:00680+2.7.1.11	Gene3D:1.10.10.480
MapMan:2.1.1.1.2	Gene3D:3.40.50.450	Gene3D:3.40.50.460	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003872	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0046835	GO:GO:0046872	GO:GO:0047334	GO:GO:0061615	UniProt:K4BW14
HAMAP:MF_01980	PFAM:PF00365	PIRSF:PIRSF005677	InterPro:PKF_sf	PANTHER:PTHR43650	PANTHER:PTHR43650:SF2
InterPro:PfpB_PPi_PFK	InterPro:Phosphofructokinase_dom	SUPFAM:SSF53784	EnsemblPlantsGene:Solyc04g082880.2	EnsemblPlants:Solyc04g082880.2.1	TIGRFAMs:TIGR02477
UniParc:UPI0002766A44	SEG:seg	:	:	:	:

Description

Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [Source:UniProtKB/TrEMBL;Acc:K4BW14]

Coordinates

chr4:-:66384697..66390625

Molecular Weight (calculated)

67305.0 Da

IEP (calculated)

7.214

GRAVY (calculated)

-0.112

Length

616 amino acids

Sequence
(BLAST)

001: MDADYGIARE LSDLQKLRSH YHPELPPCLQ GTTVRVELRD ATTAADPSGE HTIKRFFPHT YGQPLAHFLR ATAKVPDAQI ITEHPAIRVG VLFCGRQSPG
101: GHNVIWGLHD ALKVHNPNNI LLGFLGGSEG LFAQKTLEIT DDVLATYKNQ GGYDMLGRTK DQIRTTEQVN AAMAACKALK LDGLVIIGGV TSNTDAAHLA
201: EKFAETKCPT KVVGVPVTLN GDLKNQFVEA NVGFDTICKV NSQLISNVCT DALSAEKYYY FIRLMGRKAS HVALECTLQS HPNMVILGEE VAASKLTIFD
301: ITQQICDAVQ ARAEHDKNHG VILLPEGLIE SIPEIYALLQ EIHGLLRQGV SADNISSQLS PWASALFEFL PHFIRKQLLL HPESDDSAQL SQIETEKLIA
401: HLVETEMNKR LKEGTYKGKK FNAICHFFGY QARGSLPSKF DCDYAYVLGH VCYHILAAGL NGYMATITNL KNPANKWHCG AAPISAMMTV KRYGRGPGKA
501: SIGVPALHPA TVDLRGKSYE LLSQNATKFL LDDVYRNPGP LQFDGPGADA KAVTLCVEDQ DYIGRIKKLQ EYLDKVRTIV KPGCSQDVLK AALSAMASVT
601: DILSVISSPS SVSTPF

Best Arabidopsis Sequence Match ( AT1G76550.1 )
(BLAST)

001: MDSDFGIPRE LSPLQQLRSQ YHPELPPCLQ GTTVRVELGD GTTVAKAGDA HIIARAFPHT LGQPLAHFLR ATAKVADAQI ITEHPVKRVG IVFCGRQAPG
101: GHNVVWGLYE ALKVHNAKNT LLGFLGGSEG LFAQKTLEIT DEVLQTYKNQ GGYDMLGRTK DQIRTTEQVN AALKACTDLK LDSLVIIGGV TSNTDAAHLA
201: EFFAEAKCST KVVGVPVTIN GDLKNQFVEA NVGFDTTCKV NSQLISNICT DALSAEKYYY FVRLMGRKHS HVALECTLQS HPNMVILGEE VTASKLTIFD
301: IIKQICDAVQ ARAEQDKNHG VILIPEGLVE SIPELYALLK EIHGLLKEGV QVDNISTQLS SWSSALFEFL PPFIKKQLLL HPESDDSAQL SQIETEKLLA
401: YLVETEMNKR LKEGTYKGKK FNAICHFFGY QARGSLPSKF DCDYAYVLGH VCYHILAAGL NGYMATVTNL KSPVNKWKCG AAPISAMMTV KRWSQNSGST
501: TIGRPVIHPA SVDLKGKAYD LLRQNAQKFL MEDMYRNPGP VQYDGPGADA KAVSLCVEDQ DYMGKIKKLQ EYLDQVRTIV KPGCSQDVLK AALSVMASVT
601: DVLTTISSSS TSGQQFA

Arabidopsis Description

PFP-ALPHA2Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.