CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69652
CDX69884
CDX85659
CDX91135
CDY09781
CDY21608
CDY41709

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04950.1	CDX69884	AT5G09830.1	21798944
AT4G04950.1	CDY21608	AT5G09830.1	21798944
AT4G04950.1	CDX69652	AT5G13280.1	21798944
AT4G04950.1	CDX85659	AT5G13280.1	21798944
AT4G04950.1	CDX91135	AT5G13280.1	21798944
AT4G04950.1	CDY09781	AT5G13280.1	21798944
AT4G04950.1	CDY41709	AT5G22355.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029532.1-P	Field mustard	cytosol	98.7	89.38
CDY67888	Canola	cytosol	96.74	84.38
CDX90882	Canola	cytosol	89.9	57.86
AT4G04950.1	Thale cress	cytosol	86.97	54.71
AT4G32580.1	Thale cress	cytosol	28.34	54.38
CDY21322	Canola	cytosol	88.6	53.54
CDX73434	Canola	cytosol	12.7	50.0
VIT_10s0597g00030.t01	Wine grape	cytosol	74.92	46.75
GSMUA_Achr8P11270_001	Banana	cytosol	64.82	45.33
KRH20463	Soybean	nucleus	71.34	44.69
TraesCS1D01G166900.1	Wheat	cytosol	71.01	44.58
TraesCS1B01G188000.1	Wheat	cytosol	71.01	44.58
TraesCS1A01G168900.1	Wheat	cytosol	71.01	44.58
GSMUA_Achr2P10580_001	Banana	cytosol	69.71	44.4
Os10t0500700-01	Rice	cytosol	70.68	44.2
KXG38234	Sorghum	cytosol	71.01	43.69
Zm00001d013927_P001	Maize	extracellular	70.68	43.49
Solyc02g078360.2.1	Tomato	cytosol	41.69	43.24
Zm00001d032546_P001	Maize	extracellular	70.03	43.09
Zm00001d006437_P001	Maize	cytosol	42.02	41.21
CDX78278	Canola	plastid	20.2	35.84
CDY07516	Canola	plastid	20.85	35.36
CDX67614	Canola	plastid	20.52	34.81
CDY21857	Canola	mitochondrion	17.26	31.74
CDY20141	Canola	mitochondrion	17.26	31.74
Zm00001d011577_P001	Maize	cytosol	49.51	31.08
CDX97692	Canola	mitochondrion	17.26	30.99
Zm00001d016478_P001	Maize	cytosol	29.64	29.55
CDY30094	Canola	mitochondrion	15.64	29.09
Zm00001d006222_P001	Maize	cytosol	44.3	27.25
CDY14473	Canola	plastid	16.94	18.06
CDY07744	Canola	plastid	16.94	17.81

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:A0A078FQA0	UniProt:A0A078FQA0	EnsemblPlants:CDY16635	ProteinID:CDY16635
ProteinID:CDY16635.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like	EnsemblPlantsGene:GSBRNA2T00094471001	InterPro:Glutaredoxin
InterPro:IPR002109	InterPro:IPR013766	InterPro:Monothiol_GRX-rel	PFAM:PF00085	PFAM:PF00462	PFscan:PS51354
SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0004EE55FB	SEG:seg

Description

BnaA09g20130DBnaA09g20130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQA0]

Coordinates

chrLK032066:+:168203..173968

Molecular Weight (calculated)

33443.6 Da

IEP (calculated)

4.502

GRAVY (calculated)

-0.356

Length

307 amino acids

Sequence
(BLAST)

001: MGGAKQLDQV EAEEHPEISE AYSVSAVPFF VFFKDGKAVD TLEGADPSSL ANKVAKIAGS STSSEPAAPA SLGLAAGPMI LETVKENAKA TVKDRAQPAP
101: TTENLNDRLE KLTNSHPVML FMKGTPEEPR CGFSRQVVGV LREENVDFGS FDILSDNEVR EGLKKFSNWP TFPQLYCNGE LLGGSDIVLE MQKSGELRQV
201: LSEKGKQSLE DRLKTLINSE KVMLFMKGSP DEPKCGFSSK VVKALRDENV NFGSFDILSD EEVRQGIKSF SNWPTFPQLY YKGELVGGCD IIMELSNSGD
301: LGATLSE

Best Arabidopsis Sequence Match ( AT4G04950.1 )
(BLAST)

001: MSGTVKDIVS KAELDNLRQS GAPVVLHFWA SWCDASKQMD QVFSHLATDF PRAHFFRVEA EEHPEISEAY SVAAVPYFVF FKDGKTVDTL EGADPSSLAN
101: KVGKVAGSST SAEPAAPASL GLAAGPTILE TVKENAKASL QDRAQPVSTA DALKSRLEKL TNSHPVMLFM KGIPEEPRCG FSRKVVDILK EVNVDFGSFD
201: ILSDNEVREG LKKFSNWPTF PQLYCNGELL GGADIAIAMH ESGELKDAFK DLGITTVGSK ESQDEAGKGG GVSSGNTGLS ETLRARLEGL VNSKPVMLFM
301: KGRPEEPKCG FSGKVVEILN QEKIEFGSFD ILLDDEVRQG LKVYSNWSSY PQLYVKGELM GGSDIVLEMQ KSGELKKVLT EKGITGEQSL EDRLKALINS
401: SEVMLFMKGS PDEPKCGFSS KVVKALRGEN VSFGSFDILT DEEVRQGIKN FSNWPTFPQL YYKGELIGGC DIIMELSESG DLKATLSE

Arabidopsis Description

GRXS17Monothiol glutaredoxin-S17 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.