Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH40339 | Soybean | cytosol | 14.1 | 64.71 |
| CDX78278 | Canola | plastid | 92.31 | 41.62 |
| AT3G54900.1 | Thale cress | plastid | 89.74 | 40.46 |
| CDX67614 | Canola | plastid | 93.59 | 40.33 |
| CDY07516 | Canola | plastid | 93.59 | 40.33 |
| GSMUA_Achr6P15060_001 | Banana | plastid | 78.21 | 35.06 |
| TraesCS5D01G542400.1 | Wheat | plastid | 73.08 | 34.97 |
| TraesCS4A01G330300.1 | Wheat | plastid | 73.08 | 34.97 |
| Solyc02g082200.2.1 | Tomato | plastid | 78.21 | 34.66 |
| TraesCS5B01G545100.1 | Wheat | plastid | 73.08 | 34.55 |
| PGSC0003DMT400035470 | Potato | plastid | 78.21 | 34.46 |
| Zm00001d034857_P001 | Maize | plastid | 74.36 | 33.72 |
| Zm00001d012845_P001 | Maize | plastid | 74.36 | 33.72 |
| KRH00894 | Soybean | plastid | 75.64 | 33.33 |
| Os03t0851200-01 | Rice | nucleus, plastid | 71.79 | 33.33 |
| EER93091 | Sorghum | plastid | 73.08 | 33.14 |
| KRH40338 | Soybean | plastid | 61.54 | 30.19 |
| HORVU5Hr1G122340.1 | Barley | plastid | 74.36 | 29.74 |
| CDY21857 | Canola | mitochondrion | 44.87 | 20.96 |
| CDY30094 | Canola | mitochondrion | 43.59 | 20.61 |
| CDX97692 | Canola | mitochondrion | 44.87 | 20.47 |
| CDY20141 | Canola | mitochondrion | 43.59 | 20.36 |
| CDY16635 | Canola | cytosol | 50.0 | 12.7 |
| CDY14473 | Canola | plastid | 42.31 | 11.46 |
| CDY07744 | Canola | plastid | 42.31 | 11.3 |
| CDY67888 | Canola | cytosol | 50.0 | 11.08 |
| CDX90882 | Canola | cytosol | 48.72 | 7.97 |
| CDY21322 | Canola | cytosol | 48.72 | 7.48 |
Protein Annotations
| Gene3D:3.40.30.10 | MapMan:35.1 | GO:A0A078CB45 | EnsemblPlants:CDX73434 | ProteinID:CDX73434 | ProteinID:CDX73434.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009055 |
| GO:GO:0009987 | GO:GO:0015035 | GO:GO:0015036 | GO:GO:0019725 | GO:GO:0045454 | InterPro:GRX_PICOT-like |
| EnsemblPlantsGene:GSBRNA2T00108931001 | InterPro:Glutaredoxin | InterPro:IPR002109 | InterPro:Monothiol_GRX | InterPro:Monothiol_GRX-rel | PFAM:PF00462 |
| PIRSF:PIRSF005894 | PFscan:PS51354 | PANTHER:PTHR10293 | PANTHER:PTHR10293:SF37 | SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf |
| UniParc:UPI0004EF49DA | : | : | : | : | : |
Description
BnaC08g25690D
Coordinates
chrLK031799:+:327339..327762
Molecular Weight (calculated)
8767.5 Da
IEP (calculated)
3.958
GRAVY (calculated)
0.153
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MCGFSNTVVQ ILKNLNVPFE VVNILENEMV RQGLKEFSSW PTFPQLYIGG EFFGGCDITL EAFQSGELQE VVERAMCS
001: MALRSVKTPT LITSVAVVSS SVTNKPHSIR FSLKPTSALV VHNHQLSFYG SNLKLKPTKF RCSASALTPQ LKDTLEKLVN SEKVVLFMKG TRDFPMCGFS
101: NTVVQILKNL NVPFEDVNIL ENEMLRQGLK EYSNWPTFPQ LYIGGEFFGG CDITLEAFKT GELQEEVEKA MCS
101: NTVVQILKNL NVPFEDVNIL ENEMLRQGLK EYSNWPTFPQ LYIGGEFFGG CDITLEAFKT GELQEEVEKA MCS
Arabidopsis Description
GRXS14Monothiol glutaredoxin-S14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84Y95]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.