CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 6
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03940
KXG34316
KXG37471
OQU79497
OQU85769

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54900.1	KXG34316	AT3G50780.1	21798944
AT3G54900.1	KXG37471	AT3G50780.1	21798944
AT3G54900.1	OQU79497	AT3G50780.1	21798944
AT3G54900.1	OQU85769	AT3G50780.1	21798944
AT3G54900.1	EES03940	AT5G09830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012845_P001	Maize	plastid	89.53	89.53
Zm00001d034857_P001	Maize	plastid	86.05	86.05
KRH40339	Soybean	cytosol	7.56	76.47
TraesCS5D01G542400.1	Wheat	plastid	72.09	76.07
TraesCS4A01G330300.1	Wheat	plastid	71.51	75.46
Os03t0851200-01	Rice	nucleus, plastid	72.67	74.4
TraesCS5B01G545100.1	Wheat	plastid	70.93	73.94
CDX73434	Canola	cytosol	33.14	73.08
HORVU5Hr1G122340.1	Barley	plastid	72.09	63.59
GSMUA_Achr6P15060_001	Banana	plastid	58.14	57.47
CDX78278	Canola	plastid	56.4	56.07
Solyc02g082200.2.1	Tomato	plastid	56.4	55.11
PGSC0003DMT400035470	Potato	plastid	56.4	54.8
Bra007110.1-P	Field mustard	plastid	55.23	54.6
KRH00894	Soybean	plastid	55.23	53.67
AT3G54900.1	Thale cress	plastid	52.33	52.02
KRH40338	Soybean	plastid	46.51	50.31
CDX67614	Canola	plastid	52.91	50.28
Bra003199.1-P	Field mustard	plastid	52.33	49.72
CDY07516	Canola	plastid	51.74	49.17
EES16486	Sorghum	cytosol	29.07	34.01
KXG31737	Sorghum	mitochondrion	27.91	25.95
EES09081	Sorghum	plastid	35.47	21.25
EES12336	Sorghum	mitochondrion	22.09	20.0
KXG38234	Sorghum	cytosol	34.88	12.02

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	EntrezGene:8060866	UniProt:C5WSV3	EnsemblPlants:EER93091	ProteinID:EER93091
ProteinID:EER93091.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941
GO:GO:0009987	GO:GO:0015035	GO:GO:0015297	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055085	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109	InterPro:Monothiol_GRX-rel
PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF37	EnsemblPlantsGene:SORBI_3001G010900	SUPFAM:SSF52833
unigene:Sbi.1574	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI0001A8281F	RefSeq:XP_002466093.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:949330..954862

Molecular Weight (calculated)

18457.5 Da

IEP (calculated)

8.971

GRAVY (calculated)

0.042

Length

172 amino acids

Sequence
(BLAST)

001: MAASATAARP LAGAAAVPLP LPARPRTARV ALLPLTPVPG QRLALGRAGQ ERLPARGRSV RCLAALSPEM RATLDKVVGS SKVVLFMKGT KDFPQCGFSH
101: TVVQILRSLD VPFDTLDVLA NEALRQGLKE YSSWPTFPQL YIDGEFFGGC DITVEAYKSG ELQETLEKAM CS

Best Arabidopsis Sequence Match ( AT3G54900.1 )
(BLAST)

001: MALRSVKTPT LITSVAVVSS SVTNKPHSIR FSLKPTSALV VHNHQLSFYG SNLKLKPTKF RCSASALTPQ LKDTLEKLVN SEKVVLFMKG TRDFPMCGFS
101: NTVVQILKNL NVPFEDVNIL ENEMLRQGLK EYSNWPTFPQ LYIGGEFFGG CDITLEAFKT GELQEEVEKA MCS

Arabidopsis Description

GRXS14Monothiol glutaredoxin-S14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84Y95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.