CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93093
EES03940
KXG25466
KXG34945
KXG39393
OQU77880
OQU88150
OQU90452

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15660.1	KXG39393	AT4G15730.1	21798944
AT3G15660.1	OQU77880	AT4G15730.1	21798944
AT3G15660.1	OQU90452	AT4G15730.1	21798944
AT3G15660.1	EES03940	AT5G09830.1	21798944
AT3G15660.1	EER93093	AT5G13280.1	21798944
AT3G15660.1	KXG34945	AT5G13280.1	21798944
AT3G15660.1	OQU88150	AT5G13280.1	21798944
AT3G15660.1	KXG25466	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008736_P001	Maize	mitochondrion	83.24	92.22
Os01t0174900-01	Rice	mitochondrion	77.84	77.84
Os01t0530400-01	Rice	mitochondrion	77.3	77.3
EES12336	Sorghum	mitochondrion	73.51	71.58
KRH09770	Soybean	cytosol	18.92	66.04
VIT_09s0002g06040.t01	Wine grape	mitochondrion	51.89	56.47
CDY30094	Canola	mitochondrion	50.27	56.36
KRH23549	Soybean	mitochondrion	49.19	56.17
KRH44417	Soybean	cytosol, plastid	48.65	55.9
PGSC0003DMT400073383	Potato	mitochondrion	50.27	54.71
KRH47491	Soybean	cytosol, plastid	47.57	54.66
Bra027220.1-P	Field mustard	mitochondrion	50.27	54.39
CDX97692	Canola	mitochondrion	50.27	54.39
Solyc06g067960.2.1	Tomato	plastid	49.73	54.12
Bra021125.1-P	Field mustard	mitochondrion	48.11	53.29
CDY21857	Canola	mitochondrion	48.11	53.29
CDY20141	Canola	mitochondrion	47.57	52.69
AT3G15660.1	Thale cress	mitochondrion	48.11	52.66
GSMUA_Achr10P...	Banana	mitochondrion	54.59	52.6
GSMUA_Achr7P08380_001	Banana	plastid	60.0	40.81
EES16486	Sorghum	cytosol	26.49	33.33
EER93091	Sorghum	plastid	25.95	27.91
EES09081	Sorghum	plastid	32.97	21.25
KXG38234	Sorghum	cytosol	32.43	12.02

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	UniProt:A0A1B6Q1C4	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like
InterPro:Glutaredoxin	InterPro:IPR002109	EnsemblPlants:KXG31737	ProteinID:KXG31737	ProteinID:KXG31737.1	InterPro:Monothiol_GRX-rel
PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF54	EnsemblPlantsGene:SORBI_3003G048600	SUPFAM:SSF52833
TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI0001C809F5	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:4474015..4477768

Molecular Weight (calculated)

20010.9 Da

IEP (calculated)

8.447

GRAVY (calculated)

-0.255

Length

185 amino acids

Sequence
(BLAST)

001: MARLLSTALA KGLMRSSRAW TPAAVSRPAI QQFMNYSSGL GGAPNTNGDS MATRVAADHD THQDFQPTSK SSDMSFSDIV AQDVKEHPVV IYMKGYPDAP
101: RCGFSALAVK VLQQYGVPIS ARDILSDLKL KESVKAYSNW PTFPQIFIKG EFVGGSDIIL TMHQKGELKE LLGDIAQKGE QSGSS

Best Arabidopsis Sequence Match ( AT3G15660.2 )
(BLAST)

001: MAASLSSRLI KGIANLKAVR SSRLTSASVY QNGMMRFSST VPSDSDTHDD FKPTQKVPPD STDSLKDIVE NDVKDNPVMI YMKGVPESPQ CGFSSLAVRV
101: LQQYNVPISS RNILEDQELK NAVKSFSHWP TFPQIFIKGE FIGGSDIILN MHKEGELEQK LKDVSGNQD

Arabidopsis Description

GRXS15GRX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHP8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.