Factsheet for PGSC0003DMT400073383

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400005774
PGSC0003DMT400005776
PGSC0003DMT400005780
PGSC0003DMT400025616
PGSC0003DMT400031270
PGSC0003DMT400039034
PGSC0003DMT400039039
PGSC0003DMT400058635
PGSC0003DMT400065641

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15660.1	PGSC0003DMT400005774	AT4G15730.1	21798944
AT3G15660.1	PGSC0003DMT400005776	AT4G15730.1	21798944
AT3G15660.1	PGSC0003DMT400005780	AT4G15730.1	21798944
AT3G15660.1	PGSC0003DMT400031270	AT4G15730.1	21798944
AT3G15660.1	PGSC0003DMT400039034	AT4G15730.1	21798944
AT3G15660.1	PGSC0003DMT400039039	AT4G15730.1	21798944
AT3G15660.1	PGSC0003DMT400065641	AT4G15730.1	21798944
AT3G15660.1	PGSC0003DMT400058635	AT5G13280.1	21798944
AT3G15660.1	PGSC0003DMT400025616	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g067960.2.1	Tomato	plastid	98.82	98.82
VIT_09s0002g06040.t01	Wine grape	mitochondrion	74.71	74.71
KRH44417	Soybean	cytosol, plastid	66.47	70.19
KRH47491	Soybean	cytosol, plastid	65.88	69.57
CDY21857	Canola	mitochondrion	64.71	65.87
KRH23549	Soybean	mitochondrion	62.35	65.43
AT3G15660.1	Thale cress	mitochondrion	64.71	65.09
Bra027220.1-P	Field mustard	mitochondrion	65.29	64.91
CDX97692	Canola	mitochondrion	65.29	64.91
CDY30094	Canola	mitochondrion	62.94	64.85
Bra021125.1-P	Field mustard	mitochondrion	63.53	64.67
CDY20141	Canola	mitochondrion	63.53	64.67
Zm00001d008736_P001	Maize	mitochondrion	51.18	52.1
KXG31737	Sorghum	mitochondrion	54.71	50.27
Os01t0530400-01	Rice	mitochondrion	54.12	49.73
Os01t0174900-01	Rice	mitochondrion	52.94	48.65
TraesCS3A01G127900.1	Wheat	mitochondrion	51.18	46.03
TraesCS3D01G128900.1	Wheat	mitochondrion	50.0	45.95
GSMUA_Achr10P...	Banana	mitochondrion	50.59	44.79
EES12336	Sorghum	mitochondrion	48.24	43.16
Zm00001d025657_P001	Maize	mitochondrion	44.71	39.38
TraesCS3B01G147100.1	Wheat	mitochondrion	50.0	38.64
GSMUA_Achr7P08380_001	Banana	plastid	55.29	34.56
HORVU3Hr1G023970.2	Barley	cytosol	51.18	33.59
PGSC0003DMT400035470	Potato	plastid	29.41	28.25
PGSC0003DMT400011370	Potato	plastid	29.41	16.89

Protein Annotations

EntrezGene:102591260	Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0046872	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin
InterPro:IPR002109	UniProt:M1CRY0	InterPro:Monothiol_GRX-rel	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG401028515	PGSC:PGSC0003DMG401028515
EnsemblPlants:PGSC0003DMT400073383	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF54	SUPFAM:SSF52833	TIGRFAMs:TIGR00365
InterPro:Thioredoxin-like_sf	UniParc:UPI000295DA2C	RefSeq:XP_006356195.1	:	:	:

Description

Monothiol glutaredoxin-4 [Source:PGSC_GENE;Acc:PGSC0003DMG401028515]

Coordinates

chr6:-:49696666..49700276

Molecular Weight (calculated)

19024.7 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.399

Length

170 amino acids

Sequence
(BLAST)

001: MARSLSQMML KRFAAYPLAR SSAITSRSIH QGEVRYSTSV PSDPDTHEDF RPTSKLESSG LSLENIVEQD VKENPVMIYM KGVPDLPRCG FSSLAVRVLK
101: EYNAPISARN ILEDPELKNA VKAFSHWPTF PQIFINGEFI GGSDIILNMH QSGELKEKLN TIVNNQGKEE

Best Arabidopsis Sequence Match ( AT3G15660.2 )
(BLAST)

001: MAASLSSRLI KGIANLKAVR SSRLTSASVY QNGMMRFSST VPSDSDTHDD FKPTQKVPPD STDSLKDIVE NDVKDNPVMI YMKGVPESPQ CGFSSLAVRV
101: LQQYNVPISS RNILEDQELK NAVKSFSHWP TFPQIFIKGE FIGGSDIILN MHKEGELEQK LKDVSGNQD

Arabidopsis Description

GRXS15GRX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHP8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.