Factsheet for Zm00001d008736_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 23198870
mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005151_P004
Zm00001d007121_P024
Zm00001d010490_P005
Zm00001d018301_P001
Zm00001d022481_P019
Zm00001d029134_P004
Zm00001d029179_P001
Zm00001d034851_P001
Zm00001d035282_P001
Zm00001d037282_P001
Zm00001d042264_P006
Zm00001d042726_P001
Zm00001d052721_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15660.1	Zm00001d007121_P024	AT4G15730.1	21798944
AT3G15660.1	Zm00001d010490_P005	AT4G15730.1	21798944
AT3G15660.1	Zm00001d022481_P019	AT4G15730.1	21798944
AT3G15660.1	Zm00001d029134_P004	AT4G15730.1	21798944
AT3G15660.1	Zm00001d042726_P001	AT5G09830.1	21798944
AT3G15660.1	Zm00001d005151_P004	AT5G13280.1	21798944
AT3G15660.1	Zm00001d018301_P001	AT5G13280.1	21798944
AT3G15660.1	Zm00001d029179_P001	AT5G13280.1	21798944
AT3G15660.1	Zm00001d034851_P001	AT5G13280.1	21798944
AT3G15660.1	Zm00001d035282_P001	AT5G13280.1	21798944
AT3G15660.1	Zm00001d037282_P001	AT5G13280.1	21798944
AT3G15660.1	Zm00001d042264_P006	AT5G13280.1	21798944
AT3G15660.1	Zm00001d052721_P001	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31737	Sorghum	mitochondrion	92.22	83.24
Os01t0530400-01	Rice	mitochondrion	76.65	69.19
Os01t0174900-01	Rice	mitochondrion	76.65	69.19
Zm00001d025657_P001	Maize	mitochondrion	67.66	58.55
VIT_09s0002g06040.t01	Wine grape	mitochondrion	52.69	51.76
CDY30094	Canola	mitochondrion	50.9	51.52
KRH23549	Soybean	mitochondrion	49.7	51.23
PGSC0003DMT400073383	Potato	mitochondrion	52.1	51.18
Solyc06g067960.2.1	Tomato	plastid	51.5	50.59
KRH44417	Soybean	cytosol, plastid	48.5	50.31
AT3G15660.1	Thale cress	mitochondrion	50.9	50.3
Bra027220.1-P	Field mustard	mitochondrion	50.9	49.71
CDX97692	Canola	mitochondrion	50.9	49.71
CDY21857	Canola	mitochondrion	49.7	49.7
Bra021125.1-P	Field mustard	mitochondrion	49.1	49.1
CDY20141	Canola	mitochondrion	49.1	49.1
KRH47491	Soybean	cytosol, plastid	47.31	49.07
KRH09770	Soybean	cytosol	15.57	49.06
GSMUA_Achr10P...	Banana	mitochondrion	55.09	47.92
GSMUA_Achr7P08380_001	Banana	plastid	60.48	37.13
Zm00001d012845_P001	Maize	plastid	25.15	24.42
Zm00001d034857_P001	Maize	plastid	25.15	24.42
Zm00001d005094_P001	Maize	plastid	31.14	17.87
Zm00001d044606_P001	Maize	plastid	31.14	17.81
Zm00001d006437_P001	Maize	cytosol	28.74	15.34
Zm00001d013927_P001	Maize	extracellular	33.53	11.22
Zm00001d032546_P001	Maize	extracellular	32.34	10.82
Zm00001d011577_P001	Maize	cytosol	30.54	10.43
Zm00001d006222_P001	Maize	cytosol	27.54	9.22
Zm00001d016478_P001	Maize	cytosol	7.78	4.22

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	ProteinID:AQK90541.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like
InterPro:Glutaredoxin	InterPro:IPR002109	UniProt:K7UQQ8	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354
PANTHER:PTHR10293	PANTHER:PTHR10293:SF54	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI000220B12F	EnsemblPlantsGene:Zm00001d008736
EnsemblPlants:Zm00001d008736_P001	EnsemblPlants:Zm00001d008736_T001	SEG:seg	:	:	:

Description

Monothiol glutaredoxin-S15 mitochondrial

Coordinates

chr8:+:18456747..18460827

Molecular Weight (calculated)

18143.6 Da

IEP (calculated)

9.438

GRAVY (calculated)

-0.177

Length

167 amino acids

Sequence
(BLAST)

001: MARSLSTALV RGLMRSSRAS TSAAVSRPAI QQFMNYSSGL SGTPNANGDS VTTRVAADHD THQDFQPTSK SSDMSFSDIV AQDVKEHPVV IYMKGYPDAP
101: RCGFSALAVK VLQQYGVPIS ARDILSDLKL KESVKAYSNW PTFPQIFIKG EFVGGSDIIL TMHQARL

Best Arabidopsis Sequence Match ( AT3G15660.2 )
(BLAST)

001: MAASLSSRLI KGIANLKAVR SSRLTSASVY QNGMMRFSST VPSDSDTHDD FKPTQKVPPD STDSLKDIVE NDVKDNPVMI YMKGVPESPQ CGFSSLAVRV
101: LQQYNVPISS RNILEDQELK NAVKSFSHWP TFPQIFIKGE FIGGSDIILN MHKEGELEQK LKDVSGNQD

Arabidopsis Description

GRXS15GRX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHP8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.