Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77880 | Sorghum | nucleus | 85.09 | 84.91 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 50.63 | 49.32 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 50.63 | 48.98 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 50.28 | 48.47 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 50.07 | 48.47 |
| Os05t0371100-00 | Rice | cytosol | 4.22 | 41.1 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 4.57 | 40.62 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 2.67 | 40.43 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 1.41 | 35.09 |
| PGSC0003DMT400005780 | Potato | nucleus | 5.98 | 26.9 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 26.58 | 26.71 |
| PGSC0003DMT400039039 | Potato | nucleus | 5.98 | 26.48 |
| PGSC0003DMT400039034 | Potato | nucleus | 5.84 | 26.18 |
| PGSC0003DMT400005774 | Potato | cytosol | 1.69 | 26.09 |
| Zm00001d022481_P019 | Maize | nucleus | 28.41 | 25.36 |
| Zm00001d029134_P004 | Maize | mitochondrion | 24.19 | 25.2 |
| PGSC0003DMT400031270 | Potato | nucleus | 5.63 | 24.92 |
| Zm00001d007121_P024 | Maize | nucleus | 27.5 | 24.56 |
| Solyc08g067570.1.1 | Tomato | nucleus | 5.56 | 24.38 |
| Solyc08g067490.1.1 | Tomato | nucleus | 5.27 | 24.27 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 28.06 | 24.27 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 26.93 | 24.16 |
| Solyc12g017610.1.1 | Tomato | nucleus | 5.49 | 24.07 |
| AT3G62900.2 | Thale cress | nucleus | 23.35 | 23.66 |
| CDX76670 | Canola | nucleus | 21.38 | 23.66 |
| Bra007709.1-P | Field mustard | nucleus | 21.45 | 23.52 |
| CDY11456 | Canola | nucleus | 21.38 | 23.44 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 26.37 | 23.15 |
| CDY25123 | Canola | nucleus | 21.31 | 22.94 |
| CDY54298 | Canola | nucleus | 15.12 | 22.87 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.22 | 22.64 |
| Bra003514.1-P | Field mustard | nucleus | 20.96 | 22.56 |
| CDX67908 | Canola | nucleus | 20.68 | 22.46 |
| Bra033505.1-P | Field mustard | nucleus | 14.77 | 22.44 |
| CDY66331 | Canola | nucleus | 14.77 | 22.44 |
| AT4G15730.1 | Thale cress | nucleus | 16.53 | 22.19 |
| PGSC0003DMT400065641 | Potato | nucleus | 2.74 | 20.97 |
| KRG96403 | Soybean | nucleus | 24.75 | 20.94 |
| Solyc08g067590.1.1 | Tomato | nucleus | 1.76 | 20.83 |
| CDX89924 | Canola | nucleus | 13.99 | 20.77 |
| Solyc06g008720.2.1 | Tomato | nucleus | 18.57 | 20.75 |
| KRH68140 | Soybean | nucleus | 24.19 | 20.59 |
| CDY18138 | Canola | nucleus | 13.57 | 20.27 |
| Solyc09g074670.2.1 | Tomato | nucleus | 23.63 | 20.27 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 18.07 | 19.62 |
| CDY37451 | Canola | nucleus | 14.21 | 19.48 |
| CDY32489 | Canola | nucleus | 14.35 | 18.98 |
| KRH37127 | Soybean | nucleus | 21.87 | 18.58 |
| Solyc01g067600.2.1 | Tomato | nucleus | 21.52 | 18.55 |
| Bra032575.1-P | Field mustard | nucleus | 9.0 | 18.26 |
| KRH12132 | Soybean | nucleus | 21.59 | 18.15 |
| KRH50884 | Soybean | nucleus | 20.18 | 17.85 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 20.39 | 17.81 |
| KRH02231 | Soybean | nucleus | 20.32 | 17.78 |
| AT1G02990.4 | Thale cress | nucleus | 15.96 | 17.76 |
| PGSC0003DMT400005776 | Potato | nucleus | 2.95 | 16.28 |
| Bra033364.1-P | Field mustard | nucleus | 14.98 | 13.85 |
Protein Annotations
| EntrezGene:103635747 | Gene3D:3.30.40.100 | MapMan:35.2 | UniProt:A0A1D6FRE1 | ProteinID:AQK94158.1 | ProteinID:AQK94159.1 |
| ProteinID:AQK94164.1 | ProteinID:AQK94166.1 | ProteinID:AQK94171.1 | ProteinID:AQK94172.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR011124 | PFAM:PF07496 | PFscan:PS51050 | PANTHER:PTHR23336 |
| PANTHER:PTHR23336:SF14 | UniParc:UPI0004DE7D2C | EnsemblPlantsGene:Zm00001d010490 | EnsemblPlants:Zm00001d010490_P005 | EnsemblPlants:Zm00001d010490_T005 | InterPro:Znf_CW |
| SEG:seg | : | : | : | : | : |
Description
CW-type Zinc Finger
Coordinates
chr8:+:117575051..117587415
Molecular Weight (calculated)
156349.0 Da
IEP (calculated)
9.324
GRAVY (calculated)
-0.777
Length
1422 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLGRRGEMGY EEGELELEEG EAASGGGREL VIPDALTCID ERIQNVLGHL RKKFEGEITH MNLGSMYGCH GSFLPTYPRS PLGFPQYRNT ADPKNHGSAS
0101: RSLHVLTENA QKNHFVKTEL DSSRKNEYCR ISNESDGNQQ MLNRAVIGSE QKARKIRIKL NSNKSLPRNT AAIYSGLGLD ISPSSSAEDN LDETAGALVP
0201: EVLPDESPRA ILEIMTSHYI PGGHLLSPLK ENVLELKQKP KVMVKQEAPE FQVKVELHGD WGCTTSATLD NKDKCTKEIK SDEKKDKIPI FRSSKIRVNK
0301: PSAVNKGTKP LQDVLDDTGS NLLPTIVNTE HTVEEPAKFT GAISDKMKGS KDGASKGHIS GKNKNIKEEP SLDHGFSRKN RCDSDEYNGK PHASSCQLQN
0401: IPNKTSPLER DKGKVLHMED EPSQYKSKEN GDLFSADSMA VMVGNVDRNS LGMMKGKKKV SSLQATLSGK FKFKAKKQLN DNIDRKKYGE DEHYALDHRI
0501: GLDNSYQIDK SVRLEKKTIS SGEIDNKSDV GNDGGVNISA MFDEKSDVLP LASASLPAPE PILINEQWVC CDKCENWRLL PYGMNPDILP KKWRCSMQSW
0601: LPGMNSCKIT EDETTKALRA LYMVPAPENN IKDGGHDNAM SGKGTAIAPT FQGNTQSISS LGKLKGSLDG ANVANTLESA GMSKPSKNLH APSSRNFSKL
0701: KEKRKLVESS DKGEIVGKDQ SRRMRSSVGV DHDNLRASKK MKKESNGPVM KHQPSEFEIS KSSPASETLK NIQKRSCISP GMGKYGLSSS GKHSHGEDKD
0801: FSAVVIKTSD TENSGPRDSS IKKRKLKQRQ SSQHFRDPHC SNNDTNGITK QNITEINAVK KKSRSELNLL KTDRIATDSR GTVGGVDDRI STDKECLSEQ
0901: LQENTHFQHP SLVEGTTKRE IRHAQTPIAA TSSSSKMSNS NKYIAHFQET RASPVESVSS SPLRSSDKNP LGRHRSSSWT ITENVHSQES GKINSSCSNR
1001: NYDLGSDCDK AKARISGCFN GDVSHHVQKD RDFLKDKQDV MNACLINKGS GFGARNFQLS PEHKVNPDVL SSHDNDGHKQ PTVRQNGKTQ PHFGSNQGDH
1101: ANLTYGHIKP GKGNIPNKDQ KTNPSAVKAS KQQPSLNNAS NGDASYKARQ IEKAVIENLD TRKHITLNGD ASNLTSASVL LKEARDLKHL SKRLKQEKGD
1201: DFESTSMCFE AGLKFLHVAS LWETPNIDSS NQGVSIQAMK LYSETGILFG FCAHEFERLK KMANAALAYK CVEVAYMKAA FFRSPGVIKD RHALHAASLM
1301: VAPAESPSSS ASDIDNLNNQ STVAKAVSAR GVYSPQIASN SISRNNHHLM GLLSYAEDTN NSFEGTRKSQ TSFSAYLSGI GKNQVDEVAL VRKVLDFSFH
1401: NVKGLLQLIR HSLESINHES GK
0101: RSLHVLTENA QKNHFVKTEL DSSRKNEYCR ISNESDGNQQ MLNRAVIGSE QKARKIRIKL NSNKSLPRNT AAIYSGLGLD ISPSSSAEDN LDETAGALVP
0201: EVLPDESPRA ILEIMTSHYI PGGHLLSPLK ENVLELKQKP KVMVKQEAPE FQVKVELHGD WGCTTSATLD NKDKCTKEIK SDEKKDKIPI FRSSKIRVNK
0301: PSAVNKGTKP LQDVLDDTGS NLLPTIVNTE HTVEEPAKFT GAISDKMKGS KDGASKGHIS GKNKNIKEEP SLDHGFSRKN RCDSDEYNGK PHASSCQLQN
0401: IPNKTSPLER DKGKVLHMED EPSQYKSKEN GDLFSADSMA VMVGNVDRNS LGMMKGKKKV SSLQATLSGK FKFKAKKQLN DNIDRKKYGE DEHYALDHRI
0501: GLDNSYQIDK SVRLEKKTIS SGEIDNKSDV GNDGGVNISA MFDEKSDVLP LASASLPAPE PILINEQWVC CDKCENWRLL PYGMNPDILP KKWRCSMQSW
0601: LPGMNSCKIT EDETTKALRA LYMVPAPENN IKDGGHDNAM SGKGTAIAPT FQGNTQSISS LGKLKGSLDG ANVANTLESA GMSKPSKNLH APSSRNFSKL
0701: KEKRKLVESS DKGEIVGKDQ SRRMRSSVGV DHDNLRASKK MKKESNGPVM KHQPSEFEIS KSSPASETLK NIQKRSCISP GMGKYGLSSS GKHSHGEDKD
0801: FSAVVIKTSD TENSGPRDSS IKKRKLKQRQ SSQHFRDPHC SNNDTNGITK QNITEINAVK KKSRSELNLL KTDRIATDSR GTVGGVDDRI STDKECLSEQ
0901: LQENTHFQHP SLVEGTTKRE IRHAQTPIAA TSSSSKMSNS NKYIAHFQET RASPVESVSS SPLRSSDKNP LGRHRSSSWT ITENVHSQES GKINSSCSNR
1001: NYDLGSDCDK AKARISGCFN GDVSHHVQKD RDFLKDKQDV MNACLINKGS GFGARNFQLS PEHKVNPDVL SSHDNDGHKQ PTVRQNGKTQ PHFGSNQGDH
1101: ANLTYGHIKP GKGNIPNKDQ KTNPSAVKAS KQQPSLNNAS NGDASYKARQ IEKAVIENLD TRKHITLNGD ASNLTSASVL LKEARDLKHL SKRLKQEKGD
1201: DFESTSMCFE AGLKFLHVAS LWETPNIDSS NQGVSIQAMK LYSETGILFG FCAHEFERLK KMANAALAYK CVEVAYMKAA FFRSPGVIKD RHALHAASLM
1301: VAPAESPSSS ASDIDNLNNQ STVAKAVSAR GVYSPQIASN SISRNNHHLM GLLSYAEDTN NSFEGTRKSQ TSFSAYLSGI GKNQVDEVAL VRKVLDFSFH
1401: NVKGLLQLIR HSLESINHES GK
0001: MILVSSSDAR SELGLGFGGL GEEIMQDCDF EEESTHSYVS CVDPDVALSY IDEKLENVLG HFQKDFEGGV SAENLGAKFG GYGSFLSMYQ RSPVCSRPKT
0101: SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL
0201: NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE
0301: KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV
0401: KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ
0501: EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG
0601: GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS
0701: GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD
0801: EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG
0901: TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR
1001: NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS
1101: TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS
1201: SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
0101: SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL
0201: NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE
0301: KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV
0401: KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ
0501: EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG
0601: GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS
0701: GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD
0801: EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG
0901: TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR
1001: NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS
1101: TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS
1201: SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G02990]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.