Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89924 | Canola | nucleus | 74.37 | 73.9 |
| CDY37451 | Canola | nucleus | 52.42 | 48.12 |
| CDY32489 | Canola | nucleus | 52.52 | 46.51 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 4.41 | 44.68 |
| AT1G02990.4 | Thale cress | nucleus | 56.09 | 41.78 |
| Os05t0371100-00 | Rice | cytosol | 4.94 | 32.19 |
| CDY11456 | Canola | nucleus | 29.83 | 21.9 |
| CDX76670 | Canola | nucleus | 29.2 | 21.63 |
| CDX67908 | Canola | nucleus | 29.1 | 21.16 |
| CDY25123 | Canola | nucleus | 28.89 | 20.82 |
| CDY54298 | Canola | nucleus | 18.07 | 18.3 |
| CDY66331 | Canola | nucleus | 17.44 | 17.73 |
| KXG39393 | Sorghum | mitochondrion | 24.79 | 17.63 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 26.05 | 17.53 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 16.91 | 17.37 |
| Zm00001d029134_P004 | Maize | mitochondrion | 24.47 | 17.07 |
| OQU90452 | Sorghum | nucleus | 27.31 | 16.27 |
| Zm00001d022481_P019 | Maize | nucleus | 27.1 | 16.2 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 26.37 | 15.84 |
| Zm00001d007121_P024 | Maize | nucleus | 25.95 | 15.52 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 26.79 | 15.51 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 25.74 | 15.5 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 25.63 | 15.44 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 25.63 | 15.43 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 22.16 | 14.45 |
| OQU77880 | Sorghum | nucleus | 21.43 | 14.32 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 21.95 | 14.23 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 21.85 | 14.15 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 21.64 | 13.97 |
| Zm00001d010490_P005 | Maize | nucleus | 20.27 | 13.57 |
| Os07t0669800-01 | Rice | nucleus | 13.76 | 12.5 |
Protein Annotations
| EnsemblPlants:CDY18138 | EnsemblPlantsGene:GSBRNA2T00002660001 | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | ProteinID:CDY18138 | ProteinID:CDY18138.1 |
| SEG:seg | UniParc:UPI0004EDCCC4 | UniProt:A0A078G0K1 | MapMan:35.2 | : | : |
Description
BnaC05g01610DBnaC05g01610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0K1]
Coordinates
chrLK032083:-:34893..39326
Molecular Weight (calculated)
103674.0 Da
IEP (calculated)
7.349
GRAVY (calculated)
-0.837
Length
952 amino acids
Sequence
(BLAST)
(BLAST)
001: MISMSNSSAA RREIGIGFGG TEEEMMEDSD FEEDSIHSYV SCVDPDVALS YIDEKLENVL GHFQKDFEGG VSAENLGAKY GGYGSFLSMY QRSPVCKSPP
101: PQAQHQVVSG SKCSASSAAP QVAVSGSTSK ALPASDVLVN LKKPVSKQKS ATKPSSSGPL NHKTFRLRIK VGSSDLSSPK NVSTYNSKQG FNIPPSTSEG
201: EEGLLNRIQD SPTKILMAMV SFPLHKDQLL SPLSDDIIQL GKKEKIMTDA GYVDVKKSDS KPELEKVSKS ETRNEDQILK SELPEAHKSQ KGSSRNSLRG
301: KDTAVSNTAV VDKYQEDIGG SEDVCEGLFG DSGESKEQEQ SSLVIEAKKE KLSEENALKE SLDSVQSDEE ACKLLPLGVG PERELSGTCK KPKTGKSRFS
401: SVDQPGSNKT LDGVNKTMIT QASGHKVKDI AKAYSHDRHE DRKRKQEENK VSGDCMREAA VMESSGEKVR KKKRLKGSSC DVKELPSSNE SCDRDRGRSQ
501: ENGRDSEMIK TSVHEAKGSL VDSPAPSALD PRELKPGRNS EGDEHHDTES SAGDTLKRCR DGEGYSTMDN PGTTKEVAQS SKDTAVEVKT KESRSKKRPT
601: RKVSTESNKE GSREYQDPDT KLDTNGSHFH SPQNSDRAKT IRGKSNHLEV IAEKLKNKPS PPVEVLGHGT EISNTKEHMM RNDNHSSLNQ KQNGSTHKDD
701: VGSSPLKKES TCQTASNSIK EATDLKHMAD RLKNVVSNQE STSVYFQAAL KFLHGASLLE SSGSIARSND IYGSTSKLCE FCAHEYEKNK DMGAAALAYK
801: CMEVAYLRIT YSSHGNINRY RSELQAALQE IPSGESPSFA SDGENPNQTL AAEKAALSNT VRSSPRVTGN HVLSSGNNSS LSQLLAFSQN VSYAMDASRK
901: AQTTFAIAKG KSSDTRYSSN GIASIKRALD FDFQDMEKLL RVVRLAMEPI NM
101: PQAQHQVVSG SKCSASSAAP QVAVSGSTSK ALPASDVLVN LKKPVSKQKS ATKPSSSGPL NHKTFRLRIK VGSSDLSSPK NVSTYNSKQG FNIPPSTSEG
201: EEGLLNRIQD SPTKILMAMV SFPLHKDQLL SPLSDDIIQL GKKEKIMTDA GYVDVKKSDS KPELEKVSKS ETRNEDQILK SELPEAHKSQ KGSSRNSLRG
301: KDTAVSNTAV VDKYQEDIGG SEDVCEGLFG DSGESKEQEQ SSLVIEAKKE KLSEENALKE SLDSVQSDEE ACKLLPLGVG PERELSGTCK KPKTGKSRFS
401: SVDQPGSNKT LDGVNKTMIT QASGHKVKDI AKAYSHDRHE DRKRKQEENK VSGDCMREAA VMESSGEKVR KKKRLKGSSC DVKELPSSNE SCDRDRGRSQ
501: ENGRDSEMIK TSVHEAKGSL VDSPAPSALD PRELKPGRNS EGDEHHDTES SAGDTLKRCR DGEGYSTMDN PGTTKEVAQS SKDTAVEVKT KESRSKKRPT
601: RKVSTESNKE GSREYQDPDT KLDTNGSHFH SPQNSDRAKT IRGKSNHLEV IAEKLKNKPS PPVEVLGHGT EISNTKEHMM RNDNHSSLNQ KQNGSTHKDD
701: VGSSPLKKES TCQTASNSIK EATDLKHMAD RLKNVVSNQE STSVYFQAAL KFLHGASLLE SSGSIARSND IYGSTSKLCE FCAHEYEKNK DMGAAALAYK
801: CMEVAYLRIT YSSHGNINRY RSELQAALQE IPSGESPSFA SDGENPNQTL AAEKAALSNT VRSSPRVTGN HVLSSGNNSS LSQLLAFSQN VSYAMDASRK
901: AQTTFAIAKG KSSDTRYSSN GIASIKRALD FDFQDMEKLL RVVRLAMEPI NM
0001: MFLALTQMLL SLTLMRNSKT SWDIFRKILK VEFLLKIWFG GYGSFLSMYQ RSPVCSRPKT SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV
0101: KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH
0201: KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT
0301: MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY
0401: SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE
0501: NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ
0601: ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD
0701: SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD
0801: RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD
0901: RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA
1001: SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH
1101: GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE
1201: TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
0101: KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH
0201: KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT
0301: MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY
0401: SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE
0501: NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ
0601: ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD
0701: SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD
0801: RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD
0901: RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA
1001: SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH
1101: GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE
1201: TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G02990]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.