Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89924 | Canola | nucleus | 42.49 | 56.68 |
| CDY18138 | Canola | nucleus | 41.78 | 56.09 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 3.6 | 48.94 |
| Os05t0371100-00 | Rice | cytosol | 3.52 | 30.82 |
| Bra033364.1-P | Field mustard | nucleus | 31.69 | 26.33 |
| AT3G62900.2 | Thale cress | nucleus | 24.88 | 22.67 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 22.46 | 20.28 |
| KXG39393 | Sorghum | mitochondrion | 20.5 | 19.57 |
| AT4G15730.1 | Thale cress | nucleus | 16.12 | 19.45 |
| Zm00001d029134_P004 | Maize | mitochondrion | 20.58 | 19.27 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 13.93 | 19.2 |
| OQU90452 | Sorghum | nucleus | 23.0 | 18.4 |
| Zm00001d022481_P019 | Maize | nucleus | 22.61 | 18.14 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 22.07 | 17.84 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 21.99 | 17.77 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 21.99 | 17.73 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 21.91 | 17.72 |
| Zm00001d007121_P024 | Maize | nucleus | 21.99 | 17.65 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 22.14 | 17.21 |
| OQU77880 | Sorghum | nucleus | 18.39 | 16.49 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 18.78 | 16.44 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 18.78 | 16.34 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 18.7 | 16.26 |
| Zm00001d010490_P005 | Maize | nucleus | 17.76 | 15.96 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 18.39 | 15.93 |
| Os07t0669800-01 | Rice | nucleus | 12.36 | 15.08 |
Protein Annotations
| ArrayExpress:AT1G02990 | EnsemblPlants:AT1G02990.4 | EnsemblPlantsGene:AT1G02990 | EntrezGene:839380 | GO:GO:0003674 | GO:GO:0008150 |
| PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | ProteinID:AEE27512.1 | ProteinID:ANM57708.1 | ProteinID:ANM57710.1 | RefSeq:AT1G02990 |
| RefSeq:AT1G02990-TAIR-G | RefSeq:NP_001184894.1 | RefSeq:NP_001320193.1 | RefSeq:NP_001320195.1 | SEG:seg | TAIR:AT1G02990 |
| Unigene:At.42568 | UniParc:UPI0001E92C58 | UniProt:F4HZ99 | MapMan:35.2 | : | : |
Description
BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G02990]
Coordinates
chr1:-:681331..687368
Molecular Weight (calculated)
140789.0 Da
IEP (calculated)
8.045
GRAVY (calculated)
-0.821
Length
1278 amino acids
Sequence
(BLAST)
(BLAST)
0001: MILVSSSDAR SELGLGFGGL GEEIMQDCDF EEESTHSYVS CVDPDVALSY IDEKLENVLG HFQKDFEGGV SAENLGAKFG GYGSFLSMYQ RSPVCSRPKT
0101: SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL
0201: NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE
0301: KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV
0401: KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ
0501: EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG
0601: GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS
0701: GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD
0801: EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG
0901: TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR
1001: NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS
1101: TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS
1201: SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
0101: SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL
0201: NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE
0301: KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV
0401: KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ
0501: EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG
0601: GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS
0701: GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD
0801: EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG
0901: TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR
1001: NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS
1101: TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS
1201: SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.