Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G116600.1 | Wheat | nucleus | 98.42 | 98.36 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 98.23 | 98.17 |
| OQU90452 | Sorghum | nucleus | 64.62 | 63.89 |
| Zm00001d022481_P019 | Maize | nucleus | 63.54 | 63.03 |
| Os07t0669800-01 | Rice | nucleus | 40.32 | 60.78 |
| Zm00001d007121_P024 | Maize | nucleus | 60.06 | 59.61 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 3.23 | 54.26 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 1.77 | 49.12 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 4.62 | 45.62 |
| PGSC0003DMT400005774 | Potato | cytosol | 2.22 | 38.04 |
| PGSC0003DMT400039034 | Potato | nucleus | 6.58 | 32.81 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 29.05 | 32.44 |
| PGSC0003DMT400039039 | Potato | nucleus | 6.52 | 32.09 |
| PGSC0003DMT400005780 | Potato | nucleus | 6.39 | 31.96 |
| Solyc12g017610.1.1 | Tomato | nucleus | 6.52 | 31.79 |
| PGSC0003DMT400031270 | Potato | nucleus | 6.46 | 31.78 |
| Solyc08g067570.1.1 | Tomato | nucleus | 6.33 | 30.86 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 30.51 | 30.41 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 28.04 | 30.14 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 31.27 | 30.05 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 29.3 | 28.58 |
| Bra007709.1-P | Field mustard | nucleus | 22.59 | 27.53 |
| Solyc08g067490.1.1 | Tomato | nucleus | 5.38 | 27.51 |
| CDY11456 | Canola | nucleus | 22.53 | 27.45 |
| CDX76670 | Canola | nucleus | 22.15 | 27.24 |
| CDY66331 | Canola | nucleus | 16.01 | 27.03 |
| Bra033505.1-P | Field mustard | nucleus | 15.89 | 26.82 |
| CDY37451 | Canola | nucleus | 17.53 | 26.71 |
| CDX89924 | Canola | nucleus | 16.14 | 26.62 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.43 | 26.42 |
| CDY54298 | Canola | nucleus | 15.7 | 26.38 |
| PGSC0003DMT400005776 | Potato | nucleus | 4.3 | 26.36 |
| AT3G62900.2 | Thale cress | nucleus | 23.23 | 26.16 |
| KRG96403 | Soybean | nucleus | 27.72 | 26.06 |
| Bra003514.1-P | Field mustard | nucleus | 21.65 | 25.89 |
| Solyc08g067590.1.1 | Tomato | nucleus | 1.96 | 25.83 |
| CDX67908 | Canola | nucleus | 21.39 | 25.82 |
| PGSC0003DMT400065641 | Potato | nucleus | 3.04 | 25.81 |
| KRH68140 | Soybean | nucleus | 27.28 | 25.79 |
| Solyc09g074670.2.1 | Tomato | nucleus | 26.9 | 25.63 |
| CDY18138 | Canola | nucleus | 15.44 | 25.63 |
| CDY25123 | Canola | nucleus | 21.33 | 25.51 |
| AT4G15730.1 | Thale cress | nucleus | 17.03 | 25.4 |
| CDY32489 | Canola | nucleus | 17.09 | 25.12 |
| Solyc06g008720.2.1 | Tomato | nucleus | 19.81 | 24.61 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 20.25 | 24.43 |
| KRH37127 | Soybean | nucleus | 25.06 | 23.66 |
| Solyc01g067600.2.1 | Tomato | nucleus | 24.62 | 23.58 |
| KRH12132 | Soybean | nucleus | 24.94 | 23.3 |
| Bra032575.1-P | Field mustard | nucleus | 10.32 | 23.25 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 23.61 | 22.91 |
| KRH02231 | Soybean | nucleus | 23.16 | 22.52 |
| KRH50884 | Soybean | nucleus | 22.85 | 22.45 |
| AT1G02990.4 | Thale cress | nucleus | 17.72 | 21.91 |
| Bra033364.1-P | Field mustard | nucleus | 15.76 | 16.19 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G118500.1 | EnsemblPlantsGene:TraesCS2D01G118500 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011124 | InterPro:Znf_CW | ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | PFAM:PF07496 |
| PFscan:PS51050 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2D:+:67964579..67972506
Molecular Weight (calculated)
171935.0 Da
IEP (calculated)
8.829
GRAVY (calculated)
-0.894
Length
1580 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSVRRRQED AGGAAGMADH AELEEGEAYA DDMPPFDDPD VSLAYIDEKL QNVLGHFQKD FEGGVSAENL GSKFGGYGSF LPTYQRSPLL PHTRTPPKVA
0101: NASSRSPYHQ STEDVSQNPP AMAVPSVSQN NGSVAPFSGD SIKKERCEST ASKRGSSTHD PSNGPSKSSD QNRFKVRIKV GSDNVLARNN AAIYSGLGLD
0201: ISSPSSVEES PDGHGGLSPE FSNVQLESPR TILQIMTCFS VPGGYLLSPL HGSLLQLTKK VVPSLKKWET SLEIENAQEA YEGHVVKKMK SDGKKKKPTD
0301: MKRSNNRNDV SAFMKNEIDV ETLAGQKIAS EALSIPSSPR GMDANSNCQF EEEATGKSLE RNKDDRLKEW AANSNSKTIK AETVKEDTTD CLASGGFGSS
0401: ELELSAAKKE LKPVTEKTAL TSEEMNTTSD TDFLLDRKHE RKIKPESKSN PSVVNFEENA VIDEKAPAVC RSMEKVTSKE ASLYDTNVKN NTKSEAKRIH
0501: REQKKNAPTS SDLLDVDKGA RSSAGVKERK NDSHSKSSHS GKKPKAQPHR DVRDSLADGS HGSKEQDILE NGVELGELQP KEKYWIKRDS DMLGASKREI
0601: SSSAKHDRHT ASEEQKMHVP PSSVSTANAA PALQAPVVIE EHWVQCDICQ KWRLLPYESD PDTLPKEWKC SMQLWLPGMN RCDVGEEETT NALNALYVIP
0701: PPANGIPSVG HPHAASSGPA TANTFSINGH AEQSRKRKSF PGDGSALVDS SHPTQASAYS TITQPPPRVR STADTNHYPS ERDSVSKSVD VSTEKKKSKS
0801: KNRGSYSDGG DLVERSKKHS KGKGKREMDY GEYKASKKIK KEERHRSSRD RNPECDLASG DVSDEAKAFL AKAKSLGEKG DISSLKQKSV ARSDRLEKSK
0901: RDKDDDIALP EDRNKEQYQT SDVQRSDVSS KKRIVKEWEE SQHSSIAQVS RGTTVNHSSA AKETHKDQNL KETKSKPIKS EELYSMTDSK LGKGLHSNQI
1001: SYYGGHVNNE LVEDSTHFAG KRGPSEVLDK RSSEHALDLA GAASSDVPTT AIASSSSKAS GSQKKKNNSQ VAKTSPIESV SSSPPRNSNI DKFSQNRIVE
1101: KDGPMNANPG TMPSSVKYLN TEVDIVDNVR QAKKSKESLL ASEPVLHGSS QGNSDKDDEL VQLTQGHASE RFSLRKGLDD DQQHASGRKD STVNGSSTAR
1201: GYNHLHSGDK NNLRTDGSLV QPRTAASGSK GDLIASESKK TAAPIQDRNG LTHCALDGNP KPEVPSGKDK SYPKSNKQDM EKPKAQIAPS PLKETHSTPV
1301: KSNASKLTPQ SRRSSDENGG QQRVAKQGTS NPTDGKDGNS TAYALKEARD LKHKANRLKK EGKELESTRL YFEAALKFLH VASLLEPPGI DGLKQGDAAQ
1401: SMYSDTAKLC NFVGHEYERC KKMAAAALAY KCVEVAYLKA AYYKYPIASK DRQVLQAVVQ TTPGESPSSS ASDIDNLNNN GLSKMAPSNK DANSPQVAGN
1501: HLLLAVRNQP HLTRLLAYTN DVNSAFEATR KSQMAIASAA GNHEKGVDGL SSVKTVLDFN FRSVNDLLRL VRISMESISC
0101: NASSRSPYHQ STEDVSQNPP AMAVPSVSQN NGSVAPFSGD SIKKERCEST ASKRGSSTHD PSNGPSKSSD QNRFKVRIKV GSDNVLARNN AAIYSGLGLD
0201: ISSPSSVEES PDGHGGLSPE FSNVQLESPR TILQIMTCFS VPGGYLLSPL HGSLLQLTKK VVPSLKKWET SLEIENAQEA YEGHVVKKMK SDGKKKKPTD
0301: MKRSNNRNDV SAFMKNEIDV ETLAGQKIAS EALSIPSSPR GMDANSNCQF EEEATGKSLE RNKDDRLKEW AANSNSKTIK AETVKEDTTD CLASGGFGSS
0401: ELELSAAKKE LKPVTEKTAL TSEEMNTTSD TDFLLDRKHE RKIKPESKSN PSVVNFEENA VIDEKAPAVC RSMEKVTSKE ASLYDTNVKN NTKSEAKRIH
0501: REQKKNAPTS SDLLDVDKGA RSSAGVKERK NDSHSKSSHS GKKPKAQPHR DVRDSLADGS HGSKEQDILE NGVELGELQP KEKYWIKRDS DMLGASKREI
0601: SSSAKHDRHT ASEEQKMHVP PSSVSTANAA PALQAPVVIE EHWVQCDICQ KWRLLPYESD PDTLPKEWKC SMQLWLPGMN RCDVGEEETT NALNALYVIP
0701: PPANGIPSVG HPHAASSGPA TANTFSINGH AEQSRKRKSF PGDGSALVDS SHPTQASAYS TITQPPPRVR STADTNHYPS ERDSVSKSVD VSTEKKKSKS
0801: KNRGSYSDGG DLVERSKKHS KGKGKREMDY GEYKASKKIK KEERHRSSRD RNPECDLASG DVSDEAKAFL AKAKSLGEKG DISSLKQKSV ARSDRLEKSK
0901: RDKDDDIALP EDRNKEQYQT SDVQRSDVSS KKRIVKEWEE SQHSSIAQVS RGTTVNHSSA AKETHKDQNL KETKSKPIKS EELYSMTDSK LGKGLHSNQI
1001: SYYGGHVNNE LVEDSTHFAG KRGPSEVLDK RSSEHALDLA GAASSDVPTT AIASSSSKAS GSQKKKNNSQ VAKTSPIESV SSSPPRNSNI DKFSQNRIVE
1101: KDGPMNANPG TMPSSVKYLN TEVDIVDNVR QAKKSKESLL ASEPVLHGSS QGNSDKDDEL VQLTQGHASE RFSLRKGLDD DQQHASGRKD STVNGSSTAR
1201: GYNHLHSGDK NNLRTDGSLV QPRTAASGSK GDLIASESKK TAAPIQDRNG LTHCALDGNP KPEVPSGKDK SYPKSNKQDM EKPKAQIAPS PLKETHSTPV
1301: KSNASKLTPQ SRRSSDENGG QQRVAKQGTS NPTDGKDGNS TAYALKEARD LKHKANRLKK EGKELESTRL YFEAALKFLH VASLLEPPGI DGLKQGDAAQ
1401: SMYSDTAKLC NFVGHEYERC KKMAAAALAY KCVEVAYLKA AYYKYPIASK DRQVLQAVVQ TTPGESPSSS ASDIDNLNNN GLSKMAPSNK DANSPQVAGN
1501: HLLLAVRNQP HLTRLLAYTN DVNSAFEATR KSQMAIASAA GNHEKGVDGL SSVKTVLDFN FRSVNDLLRL VRISMESISC
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.