Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g078360.2.1 | |
| Solyc06g009750.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G15730.1 | Solyc06g009750.2.1 | AT4G02150.1 | 21798944 |
| AT4G15730.1 | Solyc02g078360.2.1 | AT4G04950.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g067570.1.1 | Tomato | nucleus | 7.7 | 39.2 |
| Solyc12g017610.1.1 | Tomato | nucleus | 7.64 | 38.89 |
| Solyc08g067590.1.1 | Tomato | nucleus | 2.55 | 35.0 |
| Solyc08g067490.1.1 | Tomato | nucleus | 6.24 | 33.33 |
| Os05t0371100-00 | Rice | cytosol | 2.85 | 32.19 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.79 | 29.81 |
| CDY54298 | Canola | nucleus | 15.94 | 27.98 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 27.39 | 27.76 |
| CDY66331 | Canola | nucleus | 15.7 | 27.67 |
| Bra033505.1-P | Field mustard | nucleus | 15.64 | 27.56 |
| KRH12132 | Soybean | nucleus | 27.33 | 26.67 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 22.85 | 26.64 |
| KRH02231 | Soybean | nucleus | 26.12 | 26.52 |
| KRH50884 | Soybean | nucleus | 25.33 | 26.0 |
| KRH37127 | Soybean | nucleus | 26.12 | 25.75 |
| AT4G15730.1 | Thale cress | nucleus | 16.48 | 25.68 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 14.0 | 24.92 |
| OQU90452 | Sorghum | nucleus | 24.06 | 24.84 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 23.76 | 24.79 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 23.64 | 24.67 |
| KXG39393 | Sorghum | mitochondrion | 20.0 | 24.65 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 23.58 | 24.62 |
| Zm00001d022481_P019 | Maize | nucleus | 23.64 | 24.48 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 24.36 | 24.45 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 22.85 | 23.79 |
| Zm00001d007121_P024 | Maize | nucleus | 22.85 | 23.68 |
| Solyc06g008720.2.1 | Tomato | nucleus | 18.0 | 23.35 |
| Solyc09g074670.2.1 | Tomato | nucleus | 23.33 | 23.22 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 20.12 | 22.74 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 20.24 | 22.72 |
| Zm00001d029134_P004 | Maize | mitochondrion | 18.79 | 22.71 |
| Os07t0669800-01 | Rice | nucleus | 14.36 | 22.61 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 20.12 | 22.6 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 20.12 | 22.51 |
| OQU77880 | Sorghum | nucleus | 18.85 | 21.82 |
| Zm00001d010490_P005 | Maize | nucleus | 18.55 | 21.52 |
Protein Annotations
| EnsemblPlants:Solyc01g067600.2.1 | EnsemblPlantsGene:Solyc01g067600.2 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011124 | InterPro:Znf_CW | ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | PFAM:PF07496 |
| PFscan:PS51050 | SEG:seg | UniParc:UPI0002763160 | UniProt:K4AX08 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1:+:76439965..76448706
Molecular Weight (calculated)
181461.0 Da
IEP (calculated)
9.157
GRAVY (calculated)
-0.810
Length
1650 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEHDLEEGE ACYYNKDDDD TSFDPDIALS YIDEKLQSVL GHFQKDFEGG VSAENLGAKF GGYGSFLPTY QRSPSILPQP RTPQISQNQG TSRSPSHFAS
0101: EGAPQNPTSV SGLPSTRKNG TAASRGGHTL HDSRVPFGGD TTRQDSSAQE SNKFPAKHEV SMIKSLNPTD QRTLKLRIRV GSDKTAQKST ALHTSLGLIS
0201: PSSSMENSPT ESGEMLAKVE ESHSDSPANI LQTMTSFPVA GNVLLSPLNE KFLTLSRNEK PFAENEHVSV AKDTNPQSVM SANSSTSRLE DGDVLIRKKS
0301: KSVGLSEYVE ELNSEVRNDT MSLLKKNSGI ESLKNRHCFS NDLNQRVVHD LVCDTHESVK GAGGAPEAIK ASEKEVPLKK REINRLKDQL FGSDLDKDDS
0401: LESLSDLSGD KYDHQEVRSR SVELQLESFQ RNASFDIKEG GMSKYSRSVP SFRANSNISE SERDSSGAAS LRKKAVKQAA THKLDQPRIP HTEKQSSEGK
0501: KKLTEHQPGL KPAADMVEVR GVSTTLKNKK SSMKDVRVAH VFDAQLKKPT NQLGRPPGDK LKKSKLEARK GQHSSSSKSR QVPCKKADSH VACATPMKDP
0601: SAMGIHDVKE LTSGAEPPVA PVFIEEDWVA CDKCERWRLL PYGTKPAQLP ERWICSMLYW LPGMNRCDIS EEETTRALHA LYQMPLPDNL NSLQNHTGRS
0701: AVGVVSADMH GLGGSSQNAG FDYMANGGKK KHKNTSSNHG PMLTTNSNLP SELVKNRSFK NVNQPVAESN SISKSNAQIP VKSSDVLGKQ LNKLTERMAN
0801: GDENPKKKSK RESDQYDRRD LKKLKIKSDQ AFVATRGVVT GTQDYHEHGN LKDTKPGLTE RVQILEKKHG NRVQDSRDSD LIDIKTNIRR EISIKKRKLR
0901: DQDYLMDSQS KGNLLGDSDV NAIVGKASGE SGFRKQKKPK VFHSEKKEPS TSKGEEKSSR TRGAVTRIVL PGTRDFPIDR SVEREHQTMK YRVKVQSRLT
1001: MEDIDSLKKD LGSEQLPVAA TSSSSKVSDS RKCRANHQVK GSPVGSVSSS PMRMLIMSNA SPARMESSGK DDAKLDDIGS PRKYLDRDGD FESDKSRVLI
1101: KGKRPGIPHS EVCENFVLDF QGNDAREKIE SSGIHSSDLG NSHMCNNNVD VPEKCSPYMP EKRAAYCSDG KGRLSKKHVS VLNEYKSAKD PPLQFKEKDW
1201: NTGFNTQRLE ENISDQLGSK EVLNSKIDPN NLDSSTKSFK NNQKVSKKDP THCSDGSREL RLKHDGVGST TKLNSVYDLE GKVLTKEKLH QESDARFAMN
1301: GRSIQTESRD LRSQVGAHAE DKLGTSVIKS KPASGAQKGS FKNVGMVNSS VSARVSTILK DPGIGVCQNA SHNSMGRLES DHCAVQEPSA PTPSKRESSS
1401: QTASIILAEA EKLRDTADRL KNSGFHADYN HGYFQAALLF LQGASHFESS NGESSKSREM NQIQIYSNAA KLCEACALEY EKHDETATAA LAYKCMEVAY
1501: MRVVNCKSMS SSRIWHDLHA NLQVPPQGES PSSSASDVDN TNNLTVAEKT VLSKNSGSHS GNHVIAPRNR PSLVRLLDFT KDVNSAMEAS RKAQIAFAAA
1601: TNVGEAENKD AFISVKRVID FSFQDVEELI RLVRQAIEAI NHNGFGGSRG
0101: EGAPQNPTSV SGLPSTRKNG TAASRGGHTL HDSRVPFGGD TTRQDSSAQE SNKFPAKHEV SMIKSLNPTD QRTLKLRIRV GSDKTAQKST ALHTSLGLIS
0201: PSSSMENSPT ESGEMLAKVE ESHSDSPANI LQTMTSFPVA GNVLLSPLNE KFLTLSRNEK PFAENEHVSV AKDTNPQSVM SANSSTSRLE DGDVLIRKKS
0301: KSVGLSEYVE ELNSEVRNDT MSLLKKNSGI ESLKNRHCFS NDLNQRVVHD LVCDTHESVK GAGGAPEAIK ASEKEVPLKK REINRLKDQL FGSDLDKDDS
0401: LESLSDLSGD KYDHQEVRSR SVELQLESFQ RNASFDIKEG GMSKYSRSVP SFRANSNISE SERDSSGAAS LRKKAVKQAA THKLDQPRIP HTEKQSSEGK
0501: KKLTEHQPGL KPAADMVEVR GVSTTLKNKK SSMKDVRVAH VFDAQLKKPT NQLGRPPGDK LKKSKLEARK GQHSSSSKSR QVPCKKADSH VACATPMKDP
0601: SAMGIHDVKE LTSGAEPPVA PVFIEEDWVA CDKCERWRLL PYGTKPAQLP ERWICSMLYW LPGMNRCDIS EEETTRALHA LYQMPLPDNL NSLQNHTGRS
0701: AVGVVSADMH GLGGSSQNAG FDYMANGGKK KHKNTSSNHG PMLTTNSNLP SELVKNRSFK NVNQPVAESN SISKSNAQIP VKSSDVLGKQ LNKLTERMAN
0801: GDENPKKKSK RESDQYDRRD LKKLKIKSDQ AFVATRGVVT GTQDYHEHGN LKDTKPGLTE RVQILEKKHG NRVQDSRDSD LIDIKTNIRR EISIKKRKLR
0901: DQDYLMDSQS KGNLLGDSDV NAIVGKASGE SGFRKQKKPK VFHSEKKEPS TSKGEEKSSR TRGAVTRIVL PGTRDFPIDR SVEREHQTMK YRVKVQSRLT
1001: MEDIDSLKKD LGSEQLPVAA TSSSSKVSDS RKCRANHQVK GSPVGSVSSS PMRMLIMSNA SPARMESSGK DDAKLDDIGS PRKYLDRDGD FESDKSRVLI
1101: KGKRPGIPHS EVCENFVLDF QGNDAREKIE SSGIHSSDLG NSHMCNNNVD VPEKCSPYMP EKRAAYCSDG KGRLSKKHVS VLNEYKSAKD PPLQFKEKDW
1201: NTGFNTQRLE ENISDQLGSK EVLNSKIDPN NLDSSTKSFK NNQKVSKKDP THCSDGSREL RLKHDGVGST TKLNSVYDLE GKVLTKEKLH QESDARFAMN
1301: GRSIQTESRD LRSQVGAHAE DKLGTSVIKS KPASGAQKGS FKNVGMVNSS VSARVSTILK DPGIGVCQNA SHNSMGRLES DHCAVQEPSA PTPSKRESSS
1401: QTASIILAEA EKLRDTADRL KNSGFHADYN HGYFQAALLF LQGASHFESS NGESSKSREM NQIQIYSNAA KLCEACALEY EKHDETATAA LAYKCMEVAY
1501: MRVVNCKSMS SSRIWHDLHA NLQVPPQGES PSSSASDVDN TNNLTVAEKT VLSKNSGSHS GNHVIAPRNR PSLVRLLDFT KDVNSAMEAS RKAQIAFAAA
1601: TNVGEAENKD AFISVKRVID FSFQDVEELI RLVRQAIEAI NHNGFGGSRG
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.