Factsheet for Solyc08g067140.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g078360.2.1
Solyc06g009750.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15730.1	Solyc06g009750.2.1	AT4G02150.1	21798944
AT4G15730.1	Solyc02g078360.2.1	AT4G04950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g067490.1.1	Tomato	nucleus	70.94	60.84
Solyc08g067570.1.1	Tomato	nucleus	62.64	51.23
Solyc12g017610.1.1	Tomato	nucleus	61.89	50.62
PGSC0003DMT400065641	Potato	nucleus	27.92	39.78
Solyc08g067590.1.1	Tomato	nucleus	14.34	31.67
Os05t0371100-00	Rice	cytosol	11.32	20.55
Os07t0669800-01	Rice	nucleus	27.55	6.97
Bra033505.1-P	Field mustard	nucleus	22.26	6.3
CDY66331	Canola	nucleus	22.26	6.3
CDY54298	Canola	nucleus	22.26	6.28
AT4G15730.1	Thale cress	nucleus	21.51	5.38
KXG39393	Sorghum	mitochondrion	24.91	4.93
Zm00001d029134_P004	Maize	mitochondrion	25.28	4.91
GSMUA_Achr5P08000_001	Banana	nucleus	26.04	4.88
Solyc01g067600.2.1	Tomato	nucleus	29.81	4.79
GSMUA_Achr3P08980_001	Banana	nucleus	29.43	4.74
GSMUA_Achr8P21920_001	Banana	nucleus	27.55	4.61
OQU90452	Sorghum	nucleus	27.55	4.57
Zm00001d007121_P024	Maize	nucleus	26.79	4.46
Zm00001d022481_P019	Maize	nucleus	26.79	4.46
TraesCS2D01G118500.1	Wheat	nucleus	26.42	4.43
TraesCS2A01G116600.1	Wheat	nucleus	26.42	4.43
TraesCS2B01G135800.1	Wheat	nucleus	26.42	4.43
OQU77880	Sorghum	nucleus	23.77	4.42
TraesCS1B01G246700.4	Wheat	nucleus	24.15	4.38
TraesCS1D01G235200.1	Wheat	nucleus	24.15	4.35
KRH37127	Soybean	nucleus	27.17	4.3
HORVU1Hr1G058250.1	Barley	nucleus	23.77	4.29
Zm00001d010490_P005	Maize	nucleus	22.64	4.22
TraesCS1A01G237200.3	Wheat	nucleus	23.02	4.14
KRH12132	Soybean	nucleus	26.04	4.08
KRH50884	Soybean	nucleus	24.53	4.04
Solyc09g074670.2.1	Tomato	nucleus	25.28	4.04
KRH02231	Soybean	nucleus	24.53	4.0
Solyc06g008720.2.1	Tomato	nucleus	18.11	3.77
Os03t0347300-01	Rice	cytosol, nucleus	11.7	3.34
VIT_05s0020g01570.t01	Wine grape	cytosol, mitochondrion, plastid	16.6	2.7

Protein Annotations

EnsemblPlants:Solyc08g067140.1.1	EnsemblPlantsGene:Solyc08g067140.1	PANTHER:PTHR23336	PANTHER:PTHR23336:SF14	SEG:seg	UniParc:UPI000276C0A0
UniProt:K4CLU0	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr8:-:56063990..56064945

Molecular Weight (calculated)

30261.1 Da

IEP (calculated)

9.815

GRAVY (calculated)

-0.878

Length

265 amino acids

Sequence
(BLAST)

001: MAEEHKIEGG EIYDDLVYGY SDVKIPMEED EVEEGEIHDN FHIDIDAKIQ SVLGDYMKDF EGAENLGPIF GVYGSFLGSD QLVVQPQISQ KLLSPTPVSS
101: HKPIRIRIKL RSSNKIAAPK SSDSPPPAPF IIQEDWIRYS TCRKRRLLPY ARKGREVSVK KRKSREQDYL GNELGESDAN AFERKLRKQN KSKVIQTEKK
201: KSSRSGKSTR RDRGIKDCGP IEREQQANKY GVKQQSQAEC GMMRKPVYKK AIGYGKVARP YIAYW

Best Arabidopsis Sequence Match ( AT1G02990.3 )
(BLAST)

0001: MILVSSSDAR SELGLGFGGL GEEIMQDCDF EEESTHSYVS CVDPDVALSY IDEKLENVLG HFQKDFEGGV SAENLGAKFG GYGSFLSMYQ RSPVCSRPKT
0101: SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL
0201: NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE
0301: KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV
0401: KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ
0501: EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG
0601: GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS
0701: GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD
0801: EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG
0901: TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR
1001: NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS
1101: TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS
1201: SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR

Arabidopsis Description

BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G02990]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.