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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400013673 Potato cytosol, plastid, vacuole 10.22 81.25
Os05t0371100-00 Rice cytosol 3.93 34.25
Solyc09g074670.2.1 Tomato nucleus 32.86 25.21
VIT_07s0104g01600.t01 Wine grape nucleus 31.45 24.69
CDX76670 Canola nucleus 24.69 24.44
CDY11456 Canola nucleus 24.84 24.36
Bra007709.1-P Field mustard nucleus 24.76 24.29
CDX67908 Canola nucleus 24.84 24.14
Bra003514.1-P Field mustard nucleus 24.92 24.0
CDY25123 Canola nucleus 24.61 23.69
AT3G62900.2 Thale cress nucleus 25.71 23.31
KRH68140 Soybean nucleus 29.8 22.68
KRG96403 Soybean nucleus 29.8 22.55
GSMUA_Achr5P08000_001 Banana nucleus 23.19 20.85
OQU90452 Sorghum nucleus 25.79 20.53
Solyc08g067570.1.1 Tomato nucleus 5.19 20.37
Solyc12g017610.1.1 Tomato nucleus 5.11 20.06
Zm00001d022481_P019 Maize nucleus 25.08 20.03
KXG39393 Sorghum mitochondrion 21.07 20.01
TraesCS2D01G118500.1 Wheat nucleus 24.61 19.81
TraesCS2B01G135800.1 Wheat nucleus 24.61 19.8
TraesCS2A01G116600.1 Wheat nucleus 24.45 19.67
Zm00001d029134_P004 Maize mitochondrion 20.83 19.41
Os03t0347300-01 Rice cytosol, nucleus 14.07 19.31
Zm00001d007121_P024 Maize nucleus 23.9 19.1
GSMUA_Achr3P08980_001 Banana nucleus 24.29 18.8
Solyc08g067490.1.1 Tomato nucleus 4.56 18.77
Zm00001d010490_P005 Maize nucleus 20.75 18.57
OQU77880 Sorghum nucleus 20.68 18.46
GSMUA_Achr8P21920_001 Banana nucleus 22.88 18.36
Os07t0669800-01 Rice nucleus 15.09 18.32
TraesCS1B01G246700.4 Wheat nucleus 20.99 18.29
Solyc08g067140.1.1 Tomato nucleus 3.77 18.11
TraesCS1D01G235200.1 Wheat nucleus 20.91 18.1
Solyc01g067600.2.1 Tomato nucleus 23.35 18.0
TraesCS1A01G237200.3 Wheat nucleus 20.83 17.97
HORVU1Hr1G058250.1 Barley nucleus 20.68 17.9
Solyc08g067590.1.1 Tomato nucleus 1.26 13.33
Protein Annotations
EnsemblPlants:Solyc06g008720.2.1EnsemblPlantsGene:Solyc06g008720.2PANTHER:PTHR23336PANTHER:PTHR23336:SF14SEG:segUniParc:UPI0002766917
UniProt:K4C3Q2MapMan:35.2::::
Description
No Description!
Coordinates
chr6:-:2628999..2637520
Molecular Weight (calculated)
138696.0 Da
IEP (calculated)
8.504
GRAVY (calculated)
-0.912
Length
1272 amino acids
Sequence
(BLAST)
0001: MNKNKFEEGE TCDDSTVDPD IALSYIDEKL QDVLGHFQKD FEDGVSSENL GSKFGGYGSF LPTYQRSPSW TCTKTPPDAY NNNRSTSPSS LRPEGGRRPS
0101: SASSSASLSG KPLASSAYSS TIVPTLKAPA ANGKTNSSLQ PAQDEDSTSR SELVKKPTNL SDKKTPKLHA RIGIKKFSTQ KKAEIYSGLG LDVSPSSSLD
0201: DSPISSEGLS HDLRDSRYES PTSILQIMTS YPMHDGLLLS PLSDDLLCLT EKEKVRGGST SECMIQESLE TSVTLVNGAH YANRRSSEAR KWKSYNKDVL
0301: GIGYGSDNQN GSTVQSKELD LKVITCEELV SEALKLPLLS NPNHNVADPL KDAGRVSDSP RAAVRDKTAE CSSYKAGSQE SRSPEMLKVS DAVGNKSLVE
0401: HNCLTKERVN VGKTEKPCSS GEYPILASNE STSLDALHAS QDNRDHSVQG IDSSGRKRYG SKGSSSGTKE DGSQSSNYVM MNHQENPNCR SSSGTSRSLD
0501: KTCNQHTGVP NSSVVEKRRH KNKEKKISHD NHSDGGTKDA NTRNTSEVES DVSSKKIIQD DALDDENQTF CPVVEKSRWS SSSKMPEMIR DKCKNRDSED
0601: DSKKDLVSAK NPEAYISDVS THKGKCDNND SPIKRKGREL RDSLTCNPQD SMEKICDDIS RKEKVARVSL SDRKDTSASK GSAGTGQVKK EQQAGQDLDS
0701: TLSLLSVKAA DSSQKDLCNS RPSVAPSSAL PTSSPKRSSD GENDVFSNKS SMVKKDNACN GKSYDLLSEA ELEEKDVHRE SGKKVKAKSM VSGYATQQDT
0801: DVSADPLRQA SHFACKTGNS DQGSDKERKN DHQFQNSGSV SNRKRGSSSR RKEKNRAPKS DSDQCKTKDT DILNLSSEQM PFNEEKTAPG KNKSQGKSVV
0901: GSDRLKKSSK KDPSGKLLEK NVKGDNESRF VHRDDAEVQM DVVARLDKRQ ATLPERDDER SSKVISNKSE QINVSSKSPL TRDQNETAVF KEPVPGSERE
1001: NGNAFERERS NTSRQGKKAK SHHGNLPNNT ANKVRYQDVP SPVRKDSSSQ AATNAIKEAT NLKHLADRLK NSGSSESTGI YFQAALKFLH GASLLELDSS
1101: KHGEQNQSRS IYSSTAKLCQ FCGHEYEKLR DMAAAALAYK CMEVAYMRVI YSSQSDANRY RNELQTALQI FPPVDMAASA KVVGSPQVAG THVISAGNGS
1201: SFTQLINLAQ AVNFAMEASR KSRVAFAAVY PGPGDSQCKE GALSVKRALD FNFQDVDGLL RLVRVAMEAI SH
Best Arabidopsis Sequence Match ( AT3G62900.2 )
(BLAST)
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.