Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029537 | Potato | mitochondrion | 3.26 | 94.74 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 36.43 | 37.28 |
| Os05t0371100-00 | Rice | cytosol | 3.02 | 34.25 |
| Solyc06g008720.2.1 | Tomato | nucleus | 25.21 | 32.86 |
| Bra007709.1-P | Field mustard | nucleus | 25.51 | 32.61 |
| CDY11456 | Canola | nucleus | 25.51 | 32.61 |
| AT3G62900.2 | Thale cress | nucleus | 27.44 | 32.43 |
| CDY25123 | Canola | nucleus | 25.69 | 32.25 |
| CDX76670 | Canola | nucleus | 24.97 | 32.22 |
| KRG96403 | Soybean | nucleus | 32.57 | 32.12 |
| Bra003514.1-P | Field mustard | nucleus | 25.33 | 31.79 |
| KRH68140 | Soybean | nucleus | 31.97 | 31.72 |
| CDX67908 | Canola | nucleus | 25.03 | 31.7 |
| Solyc08g067570.1.1 | Tomato | nucleus | 5.91 | 30.25 |
| Solyc12g017610.1.1 | Tomato | nucleus | 5.91 | 30.25 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 25.33 | 29.68 |
| Solyc08g067490.1.1 | Tomato | nucleus | 5.25 | 28.16 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 15.38 | 27.51 |
| Solyc08g067590.1.1 | Tomato | nucleus | 1.99 | 27.5 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 25.87 | 27.07 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 26.78 | 27.01 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 25.63 | 26.9 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 25.51 | 26.76 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 25.51 | 26.76 |
| KXG39393 | Sorghum | mitochondrion | 21.53 | 26.66 |
| OQU90452 | Sorghum | nucleus | 24.79 | 25.72 |
| Zm00001d022481_P019 | Maize | nucleus | 24.55 | 25.55 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.04 | 25.28 |
| Zm00001d007121_P024 | Maize | nucleus | 24.0 | 25.0 |
| Zm00001d029134_P004 | Maize | mitochondrion | 20.39 | 24.76 |
| Os07t0669800-01 | Rice | nucleus | 15.62 | 24.71 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 21.35 | 24.25 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 21.41 | 24.15 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 21.05 | 23.66 |
| OQU77880 | Sorghum | nucleus | 20.33 | 23.65 |
| Zm00001d010490_P005 | Maize | nucleus | 20.27 | 23.63 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 20.93 | 23.62 |
| Solyc01g067600.2.1 | Tomato | nucleus | 23.22 | 23.33 |
Protein Annotations
| EnsemblPlants:Solyc09g074670.2.1 | EnsemblPlantsGene:Solyc09g074670.2 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011124 | InterPro:Znf_CW | ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | PFAM:PF07496 |
| PFscan:PS51050 | SEG:seg | UniParc:UPI000276B594 | UniProt:K4CV44 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr9:+:66491775..66501547
Molecular Weight (calculated)
181046.0 Da
IEP (calculated)
9.306
GRAVY (calculated)
-0.910
Length
1658 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEETELEEGE AYSYDNYKKN DSTIDPDVSL SYLDEKLYNV LGHFQSDFEG EVSAENLGSR FGGYGSFLPT YQISPSWSHP RTPQEANKNS RQVSPNNLLP
0101: EGGRQTTLGS SSTSLSGRFA ASSARSAAVS ALKAPQFKGG TNSAQPTTRA EDFNFKGQKV KKQRNASDPK SLKLRIKVGP QNLSTQKNAE IYSGLGLDVS
0201: PSSSLDGSPI DSEGVSRDLQ VSPDESPTSI LQIMTSHPMS DTLLLSPLSD ELISLTENEK HWGKCGYEGN KKAILESLPL ANGTHYANGE ASEARKLVTS
0301: DKKSLAKGKG CANENDSALL SKKDIDSLAC EELVSKALKL PLLSNPYPNA ADPPKDTEKT VDSSKTATKG KRKEASSERT SKKFLLPVTA IDKNSVEGSG
0401: GKVSSSRRTM EIKGTDCNDH SSGYLKKEGQ NQEEKADASS NNGQSKDMNV RNVDAVSPLK QSSRQKSSSN NEDGMKLAPE KEVFASRDTM KPKGNQCHHA
0501: QSTEVIKEGS VPDSFIASKG KKTSSSNMHL SKSEPEDMKK NLARDKYKQF FGDVEHELED AETGLEQIHS KEMLKGSDVI SKKRLERDSS MKEKVNGRKT
0601: EKPFASDEYP GLASDGAPHT VIESNPAAPP GVGAPVVKED WVCCDKCQTW RILPLGTDPD SLPKKWVCKL QTWLPGLNRC GVSEEETTMV LRALYQAPMS
0701: GITAPAADKQ YSEHEYPGGA LSGPTSIDTS HASLEPQKAG IQTVDAGGKK IYGLKGVSSA IKQEGLLSSN GVKRNHQGTP NSRSSNGTTN SPSDENGHQL
0801: VGLPSSSIVE KQRPKQKEKR RSLENHPNGG IKSSKMRNTS ETDLDGSTAK KFRRDDVHND YNLIEAKPGQ SSSTGLSGSE KIRDKYKYKQ PKVDSLKNLA
0901: VAKNPESRSL DGSIQKCDIK DSLKRKRSDC QNPETQPPPD IIEETCDNDR KKEKKAKVSK SVGKDSSRSG ASEETDVKGR NNKGNRVGQD LYSTVSQRSA
1001: DAEDSPKRDL SALQPSVATT SSSSKVSGSH KNRTSLQEPK SSPVESVSSS PLRISKKDLC SATKRNPKRK DEHKSANSIP SSTPRWSSYG ENDRCSNRSG
1101: MMKKEESSNG KHHGMESAEL DYLEKDVHDV SGGTIKEKMK GSDFATHRHT DVIADPLGQA NQYAFRTENS DQSLNNERRN NSQFHNNGSI SKDEKVLFSQ
1201: HKEKNRTIRS DSGKCKTKDR DSNESSDQRI DEGKLTSGRN KAEDKSGASS DRLQQGYKRD SFGELLNENV KGVIQSKFVD GAEVKLDVIS GLDKRRAALT
1301: DRDDGRSSRK LASEKTQQIE VLEKGKSHLT SPSIRGQNET VQSSQPVPAF KREGVANLLA VDAFEGEMLN ASRQGKKSES HPGNKPNSLR QSTPPANKTR
1401: APGARSPIRK DSASQAAANA IKEATNLKHL ADRLKNSVPS ESTSLYFQAT LKFLHGASLL ESCNDSAKHS EMNQSRQIYS STAKLCEFVA HEYERLKDMA
1501: AVSLSYKCME VAYLRVIYSS NFNANRYRNE LQTALQIFPP GESPSSSASD VDNLNNPTIV DKVTMAKGVA SPQVTGTHAV SARNRASFTR LFNFAQEVYL
1601: AMDASRKSRV AFAAAYPGHS DTQCKVPALS VKKALDFSFH DVDDFLRLVR IAMEAISR
0101: EGGRQTTLGS SSTSLSGRFA ASSARSAAVS ALKAPQFKGG TNSAQPTTRA EDFNFKGQKV KKQRNASDPK SLKLRIKVGP QNLSTQKNAE IYSGLGLDVS
0201: PSSSLDGSPI DSEGVSRDLQ VSPDESPTSI LQIMTSHPMS DTLLLSPLSD ELISLTENEK HWGKCGYEGN KKAILESLPL ANGTHYANGE ASEARKLVTS
0301: DKKSLAKGKG CANENDSALL SKKDIDSLAC EELVSKALKL PLLSNPYPNA ADPPKDTEKT VDSSKTATKG KRKEASSERT SKKFLLPVTA IDKNSVEGSG
0401: GKVSSSRRTM EIKGTDCNDH SSGYLKKEGQ NQEEKADASS NNGQSKDMNV RNVDAVSPLK QSSRQKSSSN NEDGMKLAPE KEVFASRDTM KPKGNQCHHA
0501: QSTEVIKEGS VPDSFIASKG KKTSSSNMHL SKSEPEDMKK NLARDKYKQF FGDVEHELED AETGLEQIHS KEMLKGSDVI SKKRLERDSS MKEKVNGRKT
0601: EKPFASDEYP GLASDGAPHT VIESNPAAPP GVGAPVVKED WVCCDKCQTW RILPLGTDPD SLPKKWVCKL QTWLPGLNRC GVSEEETTMV LRALYQAPMS
0701: GITAPAADKQ YSEHEYPGGA LSGPTSIDTS HASLEPQKAG IQTVDAGGKK IYGLKGVSSA IKQEGLLSSN GVKRNHQGTP NSRSSNGTTN SPSDENGHQL
0801: VGLPSSSIVE KQRPKQKEKR RSLENHPNGG IKSSKMRNTS ETDLDGSTAK KFRRDDVHND YNLIEAKPGQ SSSTGLSGSE KIRDKYKYKQ PKVDSLKNLA
0901: VAKNPESRSL DGSIQKCDIK DSLKRKRSDC QNPETQPPPD IIEETCDNDR KKEKKAKVSK SVGKDSSRSG ASEETDVKGR NNKGNRVGQD LYSTVSQRSA
1001: DAEDSPKRDL SALQPSVATT SSSSKVSGSH KNRTSLQEPK SSPVESVSSS PLRISKKDLC SATKRNPKRK DEHKSANSIP SSTPRWSSYG ENDRCSNRSG
1101: MMKKEESSNG KHHGMESAEL DYLEKDVHDV SGGTIKEKMK GSDFATHRHT DVIADPLGQA NQYAFRTENS DQSLNNERRN NSQFHNNGSI SKDEKVLFSQ
1201: HKEKNRTIRS DSGKCKTKDR DSNESSDQRI DEGKLTSGRN KAEDKSGASS DRLQQGYKRD SFGELLNENV KGVIQSKFVD GAEVKLDVIS GLDKRRAALT
1301: DRDDGRSSRK LASEKTQQIE VLEKGKSHLT SPSIRGQNET VQSSQPVPAF KREGVANLLA VDAFEGEMLN ASRQGKKSES HPGNKPNSLR QSTPPANKTR
1401: APGARSPIRK DSASQAAANA IKEATNLKHL ADRLKNSVPS ESTSLYFQAT LKFLHGASLL ESCNDSAKHS EMNQSRQIYS STAKLCEFVA HEYERLKDMA
1501: AVSLSYKCME VAYLRVIYSS NFNANRYRNE LQTALQIFPP GESPSSSASD VDNLNNPTIV DKVTMAKGVA SPQVTGTHAV SARNRASFTR LFNFAQEVYL
1601: AMDASRKSRV AFAAAYPGHS DTQCKVPALS VKKALDFSFH DVDDFLRLVR IAMEAISR
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.