Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G246700.4 | Wheat | nucleus | 92.31 | 92.88 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 92.38 | 92.31 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 92.04 | 91.66 |
| OQU77880 | Sorghum | nucleus | 49.76 | 51.3 |
| Zm00001d010490_P005 | Maize | nucleus | 48.47 | 50.07 |
| Os05t0371100-00 | Rice | cytosol | 4.97 | 50.0 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 3.0 | 46.81 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 4.15 | 38.12 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 1.29 | 33.33 |
| PGSC0003DMT400005774 | Potato | cytosol | 1.97 | 31.52 |
| PGSC0003DMT400039039 | Potato | nucleus | 6.47 | 29.59 |
| PGSC0003DMT400005780 | Potato | nucleus | 6.33 | 29.43 |
| PGSC0003DMT400039034 | Potato | nucleus | 6.19 | 28.71 |
| Solyc08g067570.1.1 | Tomato | nucleus | 6.19 | 28.09 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 27.03 | 28.06 |
| Solyc12g017610.1.1 | Tomato | nucleus | 6.13 | 27.78 |
| PGSC0003DMT400031270 | Potato | nucleus | 5.92 | 27.1 |
| Solyc08g067490.1.1 | Tomato | nucleus | 5.38 | 25.57 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 27.03 | 25.05 |
| AT3G62900.2 | Thale cress | nucleus | 23.83 | 24.95 |
| CDX76670 | Canola | nucleus | 21.78 | 24.9 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 27.77 | 24.82 |
| Bra007709.1-P | Field mustard | nucleus | 21.78 | 24.67 |
| CDY11456 | Canola | nucleus | 21.65 | 24.52 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 26.89 | 24.38 |
| CDX67908 | Canola | nucleus | 21.51 | 24.14 |
| Bra003514.1-P | Field mustard | nucleus | 21.44 | 23.85 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.29 | 23.77 |
| CDY25123 | Canola | nucleus | 21.38 | 23.77 |
| Solyc08g067590.1.1 | Tomato | nucleus | 1.91 | 23.33 |
| CDY54298 | Canola | nucleus | 14.91 | 23.3 |
| CDY66331 | Canola | nucleus | 14.84 | 23.29 |
| KRG96403 | Soybean | nucleus | 26.62 | 23.26 |
| Bra033505.1-P | Field mustard | nucleus | 14.77 | 23.18 |
| PGSC0003DMT400065641 | Potato | nucleus | 2.93 | 23.12 |
| KRH68140 | Soybean | nucleus | 25.87 | 22.74 |
| AT4G15730.1 | Thale cress | nucleus | 16.34 | 22.66 |
| CDY18138 | Canola | nucleus | 14.23 | 21.95 |
| CDX89924 | Canola | nucleus | 14.16 | 21.71 |
| Bra032575.1-P | Field mustard | nucleus | 10.21 | 21.4 |
| Solyc09g074670.2.1 | Tomato | nucleus | 23.62 | 20.93 |
| Solyc06g008720.2.1 | Tomato | nucleus | 17.9 | 20.68 |
| CDY37451 | Canola | nucleus | 14.43 | 20.44 |
| Solyc01g067600.2.1 | Tomato | nucleus | 22.6 | 20.12 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 22.19 | 20.02 |
| CDY32489 | Canola | nucleus | 14.57 | 19.91 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 17.49 | 19.62 |
| KRH37127 | Soybean | nucleus | 22.12 | 19.41 |
| KRH12132 | Soybean | nucleus | 22.26 | 19.34 |
| KRH02231 | Soybean | nucleus | 20.9 | 18.89 |
| KRH50884 | Soybean | nucleus | 20.56 | 18.78 |
| AT1G02990.4 | Thale cress | nucleus | 16.34 | 18.78 |
| PGSC0003DMT400005776 | Potato | nucleus | 3.27 | 18.6 |
| Bra033364.1-P | Field mustard | nucleus | 15.72 | 15.02 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G058250.1 | EnsemblPlantsGene:HORVU1Hr1G058250 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011124 | InterPro:Znf_CW | ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | PFAM:PF07496 |
| PFscan:PS51050 | SEG:seg | UniParc:UPI000B467299 | UniProt:A0A287FSE6 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr1H:+:425494831..425505622
Molecular Weight (calculated)
159744.0 Da
IEP (calculated)
8.618
GRAVY (calculated)
-0.767
Length
1469 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLGGGTRREA GHEEGELELE DGRALGGGPE AAGREFLDPD LFTHIDERLQ NVLGHFQKDF EGGVLAENFG SRYGGYGSFL PMHQSSPSVA TQSRSPAVPP
0101: NRGSASRSPY VPVESAQKSH FVKNGLDIRG KDDYCQRTSN GTSGNPQQQM LNRAVNGPEQ KAPKIRIKVN NNRHLARNTA AIYSGLGLDI SPSSSMDDSL
0201: DGCAGAPEPK NLPDESPHTI LQIMTCHPIP GGLLLSPLAE NILALRKKSA SARKKHEAPA FDDDKAELNR DWCRTTSAAQ GDKDQMVHKY NYDEKKDHLL
0301: NIKSSKSKRD NSTIMNNGTM PDLLDISDDK DPFVLPGSIQ TEQHSLEASA KLVTDISNHL KETKNVPLKG RIRDKIPLRD IESVHVKAVN LANGDDHPKG
0401: KANSEACTAR NSFDNLSKRS KTEPALGQGF VDKIKYDSDG YDHRPSTTSS QPNNLPPSGT ATSVDRDKRK VVHVKDEPSK CKREESGSLV NADSMDTITE
0501: NVGANPSGIP KRKMKISSLQ TAPSGKKLKV KAHKQLSNDI TRKSYGEDKS VKPEKETVSS GETDNGRSDG VNDGDHKISS LSFDRSAPVP SACMTGAMES
0601: SVPVPVEPVL INEQWVCCDK CEKWRLLPYW INPDILPKKW RCSMQSWLHG MNNCKISEDE TTKALRAMPP APENNISVDV RHDIATSGIC AATIPPTIQG
0701: DLKSITTSGT LKVDSNANIS NNLKMGEMSK SSKKLEAPTS RNPDDVDCFP KQKGKRKHIG SSDDGETVAV DQLHPEAKSG AGFDHDSRRA SKKMKEPNEP
0801: AKHNPSEFEI SKSSPSIKGT PKSLHRYSGV SPSMGKYGSS SLVKCNDDKI ISNGGIRASD AGRSDVPELS IKNRKSKQRQ LSKRGSDPVV SNAFPKHTVE
0901: EALSESNHPK ENPMPELKFL TADDRKVAHA RVPIAGTDND KECLSEQHQE NIHLQQHSLL SQNSMKKNMC YAQASAAATS SSSKVSSSRK SKVDYQETRA
1001: SPVESVSSSP LRASDKNPVD QHKRYPSAVA EKVLSQESGK SCLSFSKEKS DFGSGLDHAK AHGSGCVSGD MHHHVLKDGE LRKDKEDDEC SKNDDSGLGT
1101: RNGLLNPVKV QKVNSHVLSI HGNGDDKPPP SLQNGKAPSH LNANQCDHAK LTSGKHPAQV KPDKGDAEQK DMKINPSTVK GSKQQPALNE SSNGDLSYKA
1201: KQLKKAVLEN TKQATLSRDA LNPVNTSVLL KEARDLKHLS KRLKEKGDDL ESANMCFEAG LKFLHVASLL EAPSIDSSKQ GDSIQAMRLY SETGNLCGFC
1301: AREFERLKKM ASAALAYKCV EVAYMKAAFY KHPGAIKDKH ALQATSLMVP PAESPSSSAS DVDNLNNQST AAKAISRALY SPQIGVNSIP RNNHHLMGLL
1401: AYADDINYAF DGTRKSQSSL AAYVTDIGMG QADGIALVRE VLEFSFHNVK GLLQLIRHSL ESINHESVK
0101: NRGSASRSPY VPVESAQKSH FVKNGLDIRG KDDYCQRTSN GTSGNPQQQM LNRAVNGPEQ KAPKIRIKVN NNRHLARNTA AIYSGLGLDI SPSSSMDDSL
0201: DGCAGAPEPK NLPDESPHTI LQIMTCHPIP GGLLLSPLAE NILALRKKSA SARKKHEAPA FDDDKAELNR DWCRTTSAAQ GDKDQMVHKY NYDEKKDHLL
0301: NIKSSKSKRD NSTIMNNGTM PDLLDISDDK DPFVLPGSIQ TEQHSLEASA KLVTDISNHL KETKNVPLKG RIRDKIPLRD IESVHVKAVN LANGDDHPKG
0401: KANSEACTAR NSFDNLSKRS KTEPALGQGF VDKIKYDSDG YDHRPSTTSS QPNNLPPSGT ATSVDRDKRK VVHVKDEPSK CKREESGSLV NADSMDTITE
0501: NVGANPSGIP KRKMKISSLQ TAPSGKKLKV KAHKQLSNDI TRKSYGEDKS VKPEKETVSS GETDNGRSDG VNDGDHKISS LSFDRSAPVP SACMTGAMES
0601: SVPVPVEPVL INEQWVCCDK CEKWRLLPYW INPDILPKKW RCSMQSWLHG MNNCKISEDE TTKALRAMPP APENNISVDV RHDIATSGIC AATIPPTIQG
0701: DLKSITTSGT LKVDSNANIS NNLKMGEMSK SSKKLEAPTS RNPDDVDCFP KQKGKRKHIG SSDDGETVAV DQLHPEAKSG AGFDHDSRRA SKKMKEPNEP
0801: AKHNPSEFEI SKSSPSIKGT PKSLHRYSGV SPSMGKYGSS SLVKCNDDKI ISNGGIRASD AGRSDVPELS IKNRKSKQRQ LSKRGSDPVV SNAFPKHTVE
0901: EALSESNHPK ENPMPELKFL TADDRKVAHA RVPIAGTDND KECLSEQHQE NIHLQQHSLL SQNSMKKNMC YAQASAAATS SSSKVSSSRK SKVDYQETRA
1001: SPVESVSSSP LRASDKNPVD QHKRYPSAVA EKVLSQESGK SCLSFSKEKS DFGSGLDHAK AHGSGCVSGD MHHHVLKDGE LRKDKEDDEC SKNDDSGLGT
1101: RNGLLNPVKV QKVNSHVLSI HGNGDDKPPP SLQNGKAPSH LNANQCDHAK LTSGKHPAQV KPDKGDAEQK DMKINPSTVK GSKQQPALNE SSNGDLSYKA
1201: KQLKKAVLEN TKQATLSRDA LNPVNTSVLL KEARDLKHLS KRLKEKGDDL ESANMCFEAG LKFLHVASLL EAPSIDSSKQ GDSIQAMRLY SETGNLCGFC
1301: AREFERLKKM ASAALAYKCV EVAYMKAAFY KHPGAIKDKH ALQATSLMVP PAESPSSSAS DVDNLNNQST AAKAISRALY SPQIGVNSIP RNNHHLMGLL
1401: AYADDINYAF DGTRKSQSSL AAYVTDIGMG QADGIALVRE VLEFSFHNVK GLLQLIRHSL ESINHESVK
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.