Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32489 | Canola | nucleus | 75.46 | 49.21 |
| CDY37451 | Canola | nucleus | 69.04 | 46.67 |
| Bra033364.1-P | Field mustard | nucleus | 45.65 | 20.81 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 20.54 | 15.53 |
| Bra003514.1-P | Field mustard | nucleus | 29.24 | 15.52 |
| Bra007709.1-P | Field mustard | nucleus | 28.53 | 15.42 |
| KXG39393 | Sorghum | mitochondrion | 23.82 | 12.47 |
| Zm00001d029134_P004 | Maize | mitochondrion | 23.25 | 11.94 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 23.25 | 11.52 |
| Bra033505.1-P | Field mustard | nucleus | 15.26 | 11.43 |
| Zm00001d022481_P019 | Maize | nucleus | 24.68 | 10.86 |
| OQU90452 | Sorghum | nucleus | 24.68 | 10.83 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 21.83 | 10.48 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 21.83 | 10.41 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 23.25 | 10.32 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 23.25 | 10.31 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 23.25 | 10.31 |
| Zm00001d007121_P024 | Maize | nucleus | 23.4 | 10.3 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 21.4 | 10.21 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 23.82 | 10.16 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 21.26 | 10.1 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 22.82 | 10.09 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 1.28 | 9.57 |
| OQU77880 | Sorghum | nucleus | 19.4 | 9.54 |
| Zm00001d010490_P005 | Maize | nucleus | 18.26 | 9.0 |
| Os05t0371100-00 | Rice | cytosol | 1.28 | 6.16 |
| Os07t0669800-01 | Rice | nucleus | 6.56 | 4.39 |
Protein Annotations
Description
AT1G02990 (E=3e-108) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G62900.1); Has 5176 Blast hits to 3822 proteins in 317 species: Archae - 10; Bacteria - 289; Metazoa - 2234; Fungi - 277; Plants - 207; Viruses - 11; Other Eukaryotes - 2148 (source: NCBI BLink).
Coordinates
chrA09:+:36686318..36689183
Molecular Weight (calculated)
77576.4 Da
IEP (calculated)
8.573
GRAVY (calculated)
-1.016
Length
701 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDAQNFDGS KPELEDDVVA FPDQSVEGTE SVNTRKDMEE GEHVDPVVKV SKTRNEEQIL KSKLPKAQKS RKSSSRNGLR GKDAAVNVVN MNLPDKLQED
101: IGDSGESKEQ EQSSLVPKAK EEKLSEESAV KESFNGVRNV EEAWKCEPDS KHPIKWSDLN KDGDNTKESV RSEVTNKHSV EGGMKNVAME PERDLCKKPK
201: TGKSRFSALD QPGSNKTIGK ASPHDGHEDR KRKHKENKES GDCMREAAVM EPSGEKVRKQ KKLKKGSSCD GKELPESCDR DRVVSQENGR DSASHQPLVH
301: ESRGSLVHSL APSALDPPEL KSERISERDK HHDTDSSAGD TRKRCREGEG YITMDKPRTT KKAAESLRDN KEGYCTESEP QQEKAKESRN KKRPARKVSM
401: ESNKEDSSRE HQDPINKRDN TNSTKTKVMR HDDHVGSSPL KKEITSQAAS NSIKEATDLK HIADRLKNAG NNHESIGFYF QAALKFLHGA SLLESSGTEN
501: ATHKSIVTSK HIYGSTAKLC KFCAHEYEKD KDMGAAALAY KCMEVAYLRI TYSSHGNINR YKSELEASLQ VIPSGESPSF ASDGENPNKT LAAEKVALST
601: PVRSSPKVTG NHVLSSGNNS SLSQLLTFLM DVFLGQSQNV SLAMDASRKA QTAFAVAKGK SSDTRYSSNG ITCIKRALDF SFQDMEKLVH AVRLAMESIN
701: R
101: IGDSGESKEQ EQSSLVPKAK EEKLSEESAV KESFNGVRNV EEAWKCEPDS KHPIKWSDLN KDGDNTKESV RSEVTNKHSV EGGMKNVAME PERDLCKKPK
201: TGKSRFSALD QPGSNKTIGK ASPHDGHEDR KRKHKENKES GDCMREAAVM EPSGEKVRKQ KKLKKGSSCD GKELPESCDR DRVVSQENGR DSASHQPLVH
301: ESRGSLVHSL APSALDPPEL KSERISERDK HHDTDSSAGD TRKRCREGEG YITMDKPRTT KKAAESLRDN KEGYCTESEP QQEKAKESRN KKRPARKVSM
401: ESNKEDSSRE HQDPINKRDN TNSTKTKVMR HDDHVGSSPL KKEITSQAAS NSIKEATDLK HIADRLKNAG NNHESIGFYF QAALKFLHGA SLLESSGTEN
501: ATHKSIVTSK HIYGSTAKLC KFCAHEYEKD KDMGAAALAY KCMEVAYLRI TYSSHGNINR YKSELEASLQ VIPSGESPSF ASDGENPNKT LAAEKVALST
601: PVRSSPKVTG NHVLSSGNNS SLSQLLTFLM DVFLGQSQNV SLAMDASRKA QTAFAVAKGK SSDTRYSSNG ITCIKRALDF SFQDMEKLVH AVRLAMESIN
701: R
0001: MFLALTQMLL SLTLMRNSKT SWDIFRKILK VEFLLKIWFG GYGSFLSMYQ RSPVCSRPKT SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV
0101: KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH
0201: KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT
0301: MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY
0401: SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE
0501: NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ
0601: ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD
0701: SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD
0801: RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD
0901: RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA
1001: SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH
1101: GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE
1201: TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
0101: KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH
0201: KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT
0301: MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY
0401: SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE
0501: NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ
0601: ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD
0701: SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD
0801: RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD
0901: RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA
1001: SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH
1101: GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE
1201: TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G02990]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.