Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G235200.1 | Wheat | nucleus | 97.6 | 96.94 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 96.03 | 95.05 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 92.88 | 92.31 |
| OQU77880 | Sorghum | nucleus | 50.34 | 51.58 |
| Os05t0371100-00 | Rice | cytosol | 5.14 | 51.37 |
| Zm00001d010490_P005 | Maize | nucleus | 49.32 | 50.63 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 3.08 | 47.87 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 4.18 | 38.12 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 1.3 | 33.33 |
| PGSC0003DMT400005774 | Potato | cytosol | 2.05 | 32.61 |
| PGSC0003DMT400039039 | Potato | nucleus | 6.58 | 29.91 |
| PGSC0003DMT400005780 | Potato | nucleus | 6.44 | 29.75 |
| PGSC0003DMT400039034 | Potato | nucleus | 6.3 | 29.02 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 27.74 | 28.62 |
| Solyc08g067570.1.1 | Tomato | nucleus | 6.23 | 28.09 |
| Solyc12g017610.1.1 | Tomato | nucleus | 6.23 | 28.09 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 30.21 | 27.89 |
| PGSC0003DMT400031270 | Potato | nucleus | 6.03 | 27.41 |
| CDX76670 | Canola | nucleus | 22.47 | 25.53 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 27.67 | 25.49 |
| AT3G62900.2 | Thale cress | nucleus | 24.45 | 25.45 |
| Bra007709.1-P | Field mustard | nucleus | 22.6 | 25.44 |
| CDY11456 | Canola | nucleus | 22.47 | 25.29 |
| Solyc08g067490.1.1 | Tomato | nucleus | 5.34 | 25.24 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 28.15 | 25.0 |
| CDX67908 | Canola | nucleus | 22.33 | 24.9 |
| Bra003514.1-P | Field mustard | nucleus | 22.26 | 24.6 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 27.19 | 24.51 |
| CDY25123 | Canola | nucleus | 22.12 | 24.45 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.38 | 24.15 |
| PGSC0003DMT400065641 | Potato | nucleus | 3.01 | 23.66 |
| CDY54298 | Canola | nucleus | 15.21 | 23.62 |
| CDY66331 | Canola | nucleus | 15.07 | 23.5 |
| Bra033505.1-P | Field mustard | nucleus | 15.0 | 23.4 |
| Solyc08g067590.1.1 | Tomato | nucleus | 1.92 | 23.33 |
| KRG96403 | Soybean | nucleus | 26.85 | 23.32 |
| KRH68140 | Soybean | nucleus | 26.1 | 22.8 |
| AT4G15730.1 | Thale cress | nucleus | 16.51 | 22.76 |
| CDY18138 | Canola | nucleus | 14.45 | 22.16 |
| Bra032575.1-P | Field mustard | nucleus | 10.48 | 21.83 |
| CDX89924 | Canola | nucleus | 14.32 | 21.82 |
| Solyc09g074670.2.1 | Tomato | nucleus | 24.25 | 21.35 |
| Solyc06g008720.2.1 | Tomato | nucleus | 18.29 | 20.99 |
| CDY37451 | Canola | nucleus | 14.79 | 20.83 |
| CDY32489 | Canola | nucleus | 15.14 | 20.56 |
| PGSC0003DMT400005776 | Potato | nucleus | 3.56 | 20.16 |
| Solyc01g067600.2.1 | Tomato | nucleus | 22.74 | 20.12 |
| KRH12132 | Soybean | nucleus | 23.08 | 19.93 |
| KRH37127 | Soybean | nucleus | 22.81 | 19.89 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 17.6 | 19.62 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 21.85 | 19.59 |
| KRH02231 | Soybean | nucleus | 21.71 | 19.51 |
| KRH50884 | Soybean | nucleus | 21.44 | 19.47 |
| AT1G02990.4 | Thale cress | nucleus | 16.44 | 18.78 |
| Bra033364.1-P | Field mustard | nucleus | 15.68 | 14.89 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G246700.4 | EnsemblPlantsGene:TraesCS1B01G246700 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011124 | InterPro:Znf_CW | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | PFAM:PF07496 | PFscan:PS51050 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:436686961..436695978
Molecular Weight (calculated)
158479.0 Da
IEP (calculated)
8.617
GRAVY (calculated)
-0.789
Length
1460 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLGGGARREA GHEEGELELE DGQALGGGPD AGGHELLDPD SLTYIDERLQ NVLGHFQKDF EGGVLAENLG SRYGGYGSFL PPNQHSPSVA TQSRSPAVPP
0101: NRGSASRSPY VPVESAQKSH FVKNGLDSRG KDDYCQRTSN GTNGNPQQRM LNRVVNGPEQ KAPKIRIKVN NNRHLARNTA AIYSGLGLDI SPSSSMDDSL
0201: DGCAGAPEPK NLPDESPHTI LQIMTCHPIP GGLLLSPLAE NILALRKKSA SARKKHEAPA VDDDKTELNR DWCHTTSAAQ GDKDQMVHKY NYDEKKDHLL
0301: NIKSSKSKHD NSTIMNNGTM PDLLDISDDK DSIVPGSMQT EQHSLEASAK LVTDVSNHLK ETKNVPLKGR IRDKIPSKDI QSVHVKAVNL ANDDNYPKGK
0401: ANSEACTARN SFDNLSKDSK TEPTLGQGLV DKIKYDSDGY DHRLSTTSSQ PNNLPPSDTA TSVDRDKRKV VHVKDEPSQC KREESGGLVN ADSMDIITEN
0501: VGGNPSGMPK RKMKISSLQT VPSGKKLKVK AHKQLSNGIT RKSHGEDKSV KPEKETVSSG ETDNGRSDGV NDGDHKISPL NFDRSAPVPS ACMTGAMESS
0601: VAVPVEPILI NEQWVCCDKC EKWRLLPYWM NPDVLPKKWR CSMQSWLHGM NNCKVSEDET TKALRAMPPA PENNISVDVR HDIATSGICA ATIPPTIQGD
0701: IKSIATSGTL KVDSSANTSN NLKMGEMSKS SKKLEAPTSR NPDDVDCFPK QKGKRKHIGS SDDGETVAVD RLHPESKSSS VGFDHDSLRT SKKMKKEPNE
0801: PAKHHPSEFE ISKSSPSIKG TPKSLHRYSG VSPSMGKYGS SSLVKCNDDK IISNGGIRTS DVGRSDVPEL SIKNRKSKQR QLSKRGPDPV VSNAFPKHTV
0901: EEALSESNHA KENPMPELNF LKADDRKVAH ARGPIAGTDS DKECLSEQHQ ENTHLQQHSL LSQNSMKKNM CYAQASAAAT SSSSKVSSSH KSKVDFQETR
1001: ASPVESVSSS PLRTSDKNLV DQHKRYPSAV AEKVLSQESG KSCLSFSKEK NDFGSGSDHA KAHGSGCLSG DMQKDKQDNE CSKNEDSGLG TRNGLLNPVK
1101: VQKVNSHVLS IRGNGDDKLP PSLQNGKTPP HLSSNQCDHA KLTSGKHPVQ VKPDKGDAEQ KDMKTNPSTV KGSKQQPALN DSSNGDLSYK AKQLKKAVLE
1201: NTKQATLSRD ALNPVNTSVL LKEARDLKHL SKRLKEKGDD LESANMCFEA GLKFLHVASL LEAPSIDSSK QGDSIQAMRL YSETGNLCGF CAREFERLKK
1301: MASAALAYKC VEVAYMKAAF YKHPGAIKDK HALQATSLMV PPAESPSSSA SDVDNLNNQS TAAKAISRAL YSPKIGGNSI PRNNHHLMGL LAYADDINYA
1401: FDGTRKSQSS LAAYVTDIGK GQVDGSALVR EVLEFSFHNV KGLLQLIRHS LESINHESVK
0101: NRGSASRSPY VPVESAQKSH FVKNGLDSRG KDDYCQRTSN GTNGNPQQRM LNRVVNGPEQ KAPKIRIKVN NNRHLARNTA AIYSGLGLDI SPSSSMDDSL
0201: DGCAGAPEPK NLPDESPHTI LQIMTCHPIP GGLLLSPLAE NILALRKKSA SARKKHEAPA VDDDKTELNR DWCHTTSAAQ GDKDQMVHKY NYDEKKDHLL
0301: NIKSSKSKHD NSTIMNNGTM PDLLDISDDK DSIVPGSMQT EQHSLEASAK LVTDVSNHLK ETKNVPLKGR IRDKIPSKDI QSVHVKAVNL ANDDNYPKGK
0401: ANSEACTARN SFDNLSKDSK TEPTLGQGLV DKIKYDSDGY DHRLSTTSSQ PNNLPPSDTA TSVDRDKRKV VHVKDEPSQC KREESGGLVN ADSMDIITEN
0501: VGGNPSGMPK RKMKISSLQT VPSGKKLKVK AHKQLSNGIT RKSHGEDKSV KPEKETVSSG ETDNGRSDGV NDGDHKISPL NFDRSAPVPS ACMTGAMESS
0601: VAVPVEPILI NEQWVCCDKC EKWRLLPYWM NPDVLPKKWR CSMQSWLHGM NNCKVSEDET TKALRAMPPA PENNISVDVR HDIATSGICA ATIPPTIQGD
0701: IKSIATSGTL KVDSSANTSN NLKMGEMSKS SKKLEAPTSR NPDDVDCFPK QKGKRKHIGS SDDGETVAVD RLHPESKSSS VGFDHDSLRT SKKMKKEPNE
0801: PAKHHPSEFE ISKSSPSIKG TPKSLHRYSG VSPSMGKYGS SSLVKCNDDK IISNGGIRTS DVGRSDVPEL SIKNRKSKQR QLSKRGPDPV VSNAFPKHTV
0901: EEALSESNHA KENPMPELNF LKADDRKVAH ARGPIAGTDS DKECLSEQHQ ENTHLQQHSL LSQNSMKKNM CYAQASAAAT SSSSKVSSSH KSKVDFQETR
1001: ASPVESVSSS PLRTSDKNLV DQHKRYPSAV AEKVLSQESG KSCLSFSKEK NDFGSGSDHA KAHGSGCLSG DMQKDKQDNE CSKNEDSGLG TRNGLLNPVK
1101: VQKVNSHVLS IRGNGDDKLP PSLQNGKTPP HLSSNQCDHA KLTSGKHPVQ VKPDKGDAEQ KDMKTNPSTV KGSKQQPALN DSSNGDLSYK AKQLKKAVLE
1201: NTKQATLSRD ALNPVNTSVL LKEARDLKHL SKRLKEKGDD LESANMCFEA GLKFLHVASL LEAPSIDSSK QGDSIQAMRL YSETGNLCGF CAREFERLKK
1301: MASAALAYKC VEVAYMKAAF YKHPGAIKDK HALQATSLMV PPAESPSSSA SDVDNLNNQS TAAKAISRAL YSPKIGGNSI PRNNHHLMGL LAYADDINYA
1401: FDGTRKSQSS LAAYVTDIGK GQVDGSALVR EVLEFSFHNV KGLLQLIRHS LESINHESVK
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.