Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 4
- cytosol 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0150g00170.t01 | |
| VIT_07s0005g01100.t01 | |
| VIT_10s0597g00030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G15730.1 | VIT_01s0150g00170.t01 | AT1G01630.1 | 21798944 |
| AT4G15730.1 | VIT_07s0005g01100.t01 | AT4G02150.1 | 21798944 |
| AT4G15730.1 | VIT_10s0597g00030.t01 | AT4G04950.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 34.15 | 34.32 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 1.72 | 29.79 |
| KRH37127 | Soybean | nucleus | 29.85 | 29.03 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 23.28 | 28.93 |
| KRH50884 | Soybean | nucleus | 28.07 | 28.42 |
| KRH02231 | Soybean | nucleus | 28.07 | 28.12 |
| KRH12132 | Soybean | nucleus | 29.18 | 28.09 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 15.72 | 27.62 |
| Solyc08g067590.1.1 | Tomato | nucleus | 2.03 | 27.5 |
| Solyc01g067600.2.1 | Tomato | nucleus | 27.76 | 27.39 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 23.22 | 26.71 |
| Bra033505.1-P | Field mustard | nucleus | 14.74 | 25.64 |
| CDY66331 | Canola | nucleus | 14.68 | 25.53 |
| AT4G15730.1 | Thale cress | nucleus | 16.46 | 25.31 |
| CDY54298 | Canola | nucleus | 14.5 | 25.11 |
| PGSC0003DMT400039034 | Potato | nucleus | 4.73 | 24.29 |
| OQU90452 | Sorghum | nucleus | 23.65 | 24.09 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 23.34 | 23.97 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 24.08 | 23.84 |
| Solyc08g067570.1.1 | Tomato | nucleus | 4.73 | 23.77 |
| PGSC0003DMT400005780 | Potato | nucleus | 4.61 | 23.73 |
| PGSC0003DMT400031270 | Potato | nucleus | 4.67 | 23.68 |
| PGSC0003DMT400039039 | Potato | nucleus | 4.67 | 23.68 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 22.97 | 23.66 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 22.91 | 23.61 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 22.91 | 23.59 |
| Zm00001d022481_P019 | Maize | nucleus | 22.79 | 23.29 |
| Zm00001d007121_P024 | Maize | nucleus | 22.67 | 23.18 |
| KXG39393 | Sorghum | mitochondrion | 19.04 | 23.15 |
| Solyc12g017610.1.1 | Tomato | nucleus | 4.61 | 23.15 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 20.02 | 22.19 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 20.09 | 22.17 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 19.9 | 22.04 |
| Zm00001d029134_P004 | Maize | mitochondrion | 18.37 | 21.9 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 19.59 | 21.85 |
| OQU77880 | Sorghum | nucleus | 18.67 | 21.33 |
| Solyc08g067490.1.1 | Tomato | nucleus | 3.99 | 21.04 |
| Zm00001d010490_P005 | Maize | nucleus | 17.81 | 20.39 |
| Os07t0669800-01 | Rice | nucleus | 13.08 | 20.32 |
| Os05t0371100-00 | Rice | cytosol | 1.66 | 18.49 |
| Solyc08g067140.1.1 | Tomato | nucleus | 2.7 | 16.6 |
| PGSC0003DMT400005776 | Potato | nucleus | 2.4 | 15.12 |
| PGSC0003DMT400005774 | Potato | cytosol | 0.74 | 13.04 |
| PGSC0003DMT400065641 | Potato | nucleus | 1.41 | 12.37 |
Protein Annotations
| EntrezGene:100244340 | wikigene:100244340 | Gene3D:3.30.40.100 | MapMan:35.2 | ProteinID:CCB50330 | ProteinID:CCB50330.1 |
| UniProt:F6HDG0 | EMBL:FN595749 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR011124 |
| EntrezGene:LOC100244340 | wikigene:LOC100244340 | PFAM:PF07496 | PFscan:PS51050 | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF47 |
| TIGR:TC67162 | UniParc:UPI0002109074 | ArrayExpress:VIT_05s0020g01570 | EnsemblPlantsGene:VIT_05s0020g01570 | EnsemblPlants:VIT_05s0020g01570.t01 | unigene:Vvi.25410 |
| RefSeq:XP_002276252 | RefSeq:XP_002276252.1 | InterPro:Znf_CW | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:-:3253339..3274840
Molecular Weight (calculated)
179855.0 Da
IEP (calculated)
8.184
GRAVY (calculated)
-0.772
Length
1628 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTFGLVKTGY FFMHQFGGYG SFLPTYQRSS IWSHPKTPQR VQNYNKAISP NTLLMEGCPQ IAKAPSNAHP SVKLGTTSCD APSLHMSRVP SGNISVKQDS
0101: FLPSAPVMEM SPSKHGTSNK LVNPTGRRVP KVRIKVGSVS AEKKNAEIYS GLGLDNSPSS SLGNSPDESG GMPLESQETL QESPTSILQI MTSFAVPEGV
0201: LLSPLHDSFI CLIRKKKFPR NSKPVPALEG SQEQPALSPD EAATLLVDEQ VLKEKKTRLV GKSERRAEVK HGSGMDFKND MAFPLKEEVE NQFPEGKEHF
0301: SNDLKFTSLS NTLHDVGDSG KGTGRATEIF GEPNKDGLKE RVFFSDLDKE EPLEPITGQD SGTSVQRNVK SSSLENTWEC GVACSNKNVS ADPREDVRYK
0401: GNKLPGQFRA DSDMFRGKED TDVGEMDPQQ WKLGQKAVSH DHGRITMSCK KEKQLWEGKK KLKGAQINGE PAPHLAEEGL RIGFCSAPKD KHNLKSQKDT
0501: GEVEDNPREL LTDRKSEQMA DRIDPLKRPG ERAKVSDFKD VEKGGSAFFK SKGRSSGKRV ENQYASEASL QVALNPPFTE NRSTTKMVPA AVAPVVIEEN
0601: WVCCDSCQKW RLLPFGKKPE HLPEKWLCSM LSWLPGLNHC DISEEETTKA LNALYQLSIP ESQTSMHNHV NGIASGVTLD DVRHPAQNHQ NPSSHDMPNE
0701: GKKKYGCKKM SNAGDLEQTK TKSKREADNY GGEASKKAKT EDACYSGKNC NFKHGRDLGK VCLISDTTLP AKATGKEVIK SNEICYSVDS NCDKKDKMLL
0801: SVKKLEDQAQ VSLHGGSLAM KTSDKRDIAL EERKLNEWED IENQTDVCQI TKDHIQENKV FVKKENSEME FRKEKKTKLS IERVESNTSK GDDRSRKGVM
0901: TRILLSGTKD DEVDNIEEVR IIEKNQQHKM CEEKIASQQT LDSIDSMKKD LGTGKVSMAA TSSSSKVSGS RKTRANFQEV KGSPAESVSS SPLRASKLDN
1001: LTSDKGGILR KDDATDGGLS MVGNLGRCLN GVGNRSCNQS GAPIKEKVSS VFPPKSLELH ALDNRDGDAK PKFSAKAKPS ELRNSRLVKG DAVTSEQHHE
1101: YGNDLHAVEH CDNENHFCDS ALFPQKSSRG SSMRSKENNR RSRSDFDSDK MKVCDPLNEQ EDLHASKSLR CKLENDTQHL APHPETVSDV KHSFPGRGCI
1201: KYNDDEKNHV NKGNSLGKWS GDIKKENQLK FREYEGSNLK LGDSCSLYKS ATPQKFLNKS FAKKTDLKEL ESRGETLQLF PYHEGERETL ARDFQSVPGS
1301: QKERVFDLCS VGASASADVS KVLKEPGNAG IKNGTRQSLG HLLPNEHRVR DLSISSPMRK DSFGPSATNA LKEAKDLRDY ADRLKSSGFG FESYETYFQA
1401: AVKFLHGASL LETCNSDGGK NGVMTQIQAY STAAKLCERC AHEYERRQEM AAAALAYKCM EVACMRVVYC KHSSINRDRH ELQATLQIAP KGASPSSSAS
1501: DIDNLNNQTM TDKAALSKVS HVGGKHVIVA RNHPNFVRLL DFAQDVNFAI EASRKSQKAF VAANLLLEEA QNREGITSVR RCSLPNQQFH FHIDSNVESV
1601: HLFINKLSES LDGDIPVASH ATDPACTA
0101: FLPSAPVMEM SPSKHGTSNK LVNPTGRRVP KVRIKVGSVS AEKKNAEIYS GLGLDNSPSS SLGNSPDESG GMPLESQETL QESPTSILQI MTSFAVPEGV
0201: LLSPLHDSFI CLIRKKKFPR NSKPVPALEG SQEQPALSPD EAATLLVDEQ VLKEKKTRLV GKSERRAEVK HGSGMDFKND MAFPLKEEVE NQFPEGKEHF
0301: SNDLKFTSLS NTLHDVGDSG KGTGRATEIF GEPNKDGLKE RVFFSDLDKE EPLEPITGQD SGTSVQRNVK SSSLENTWEC GVACSNKNVS ADPREDVRYK
0401: GNKLPGQFRA DSDMFRGKED TDVGEMDPQQ WKLGQKAVSH DHGRITMSCK KEKQLWEGKK KLKGAQINGE PAPHLAEEGL RIGFCSAPKD KHNLKSQKDT
0501: GEVEDNPREL LTDRKSEQMA DRIDPLKRPG ERAKVSDFKD VEKGGSAFFK SKGRSSGKRV ENQYASEASL QVALNPPFTE NRSTTKMVPA AVAPVVIEEN
0601: WVCCDSCQKW RLLPFGKKPE HLPEKWLCSM LSWLPGLNHC DISEEETTKA LNALYQLSIP ESQTSMHNHV NGIASGVTLD DVRHPAQNHQ NPSSHDMPNE
0701: GKKKYGCKKM SNAGDLEQTK TKSKREADNY GGEASKKAKT EDACYSGKNC NFKHGRDLGK VCLISDTTLP AKATGKEVIK SNEICYSVDS NCDKKDKMLL
0801: SVKKLEDQAQ VSLHGGSLAM KTSDKRDIAL EERKLNEWED IENQTDVCQI TKDHIQENKV FVKKENSEME FRKEKKTKLS IERVESNTSK GDDRSRKGVM
0901: TRILLSGTKD DEVDNIEEVR IIEKNQQHKM CEEKIASQQT LDSIDSMKKD LGTGKVSMAA TSSSSKVSGS RKTRANFQEV KGSPAESVSS SPLRASKLDN
1001: LTSDKGGILR KDDATDGGLS MVGNLGRCLN GVGNRSCNQS GAPIKEKVSS VFPPKSLELH ALDNRDGDAK PKFSAKAKPS ELRNSRLVKG DAVTSEQHHE
1101: YGNDLHAVEH CDNENHFCDS ALFPQKSSRG SSMRSKENNR RSRSDFDSDK MKVCDPLNEQ EDLHASKSLR CKLENDTQHL APHPETVSDV KHSFPGRGCI
1201: KYNDDEKNHV NKGNSLGKWS GDIKKENQLK FREYEGSNLK LGDSCSLYKS ATPQKFLNKS FAKKTDLKEL ESRGETLQLF PYHEGERETL ARDFQSVPGS
1301: QKERVFDLCS VGASASADVS KVLKEPGNAG IKNGTRQSLG HLLPNEHRVR DLSISSPMRK DSFGPSATNA LKEAKDLRDY ADRLKSSGFG FESYETYFQA
1401: AVKFLHGASL LETCNSDGGK NGVMTQIQAY STAAKLCERC AHEYERRQEM AAAALAYKCM EVACMRVVYC KHSSINRDRH ELQATLQIAP KGASPSSSAS
1501: DIDNLNNQTM TDKAALSKVS HVGGKHVIVA RNHPNFVRLL DFAQDVNFAI EASRKSQKAF VAANLLLEEA QNREGITSVR RCSLPNQQFH FHIDSNVESV
1601: HLFINKLSES LDGDIPVASH ATDPACTA
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.