Factsheet for PGSC0003DMT400035470

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400026018

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54900.1	PGSC0003DMT400026018	AT3G50780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082200.2.1	Tomato	plastid	95.48	96.02
CDX73434	Canola	cytosol	34.46	78.21
KRH40339	Soybean	cytosol	6.21	64.71
KRH00894	Soybean	plastid	57.63	57.63
Zm00001d034857_P001	Maize	plastid	55.37	56.98
Os03t0851200-01	Rice	nucleus, plastid	53.67	56.55
Zm00001d012845_P001	Maize	plastid	54.8	56.4
EER93091	Sorghum	plastid	54.8	56.4
KRH40338	Soybean	plastid	49.72	55.35
TraesCS5D01G542400.1	Wheat	plastid	50.85	55.21
TraesCS4A01G330300.1	Wheat	plastid	50.28	54.6
GSMUA_Achr6P15060_001	Banana	plastid	53.67	54.6
TraesCS5B01G545100.1	Wheat	plastid	50.28	53.94
AT3G54900.1	Thale cress	plastid	52.54	53.76
CDX78278	Canola	plastid	51.98	53.18
Bra007110.1-P	Field mustard	plastid	51.98	52.87
CDY07516	Canola	plastid	53.11	51.93
CDX67614	Canola	plastid	53.11	51.93
Bra003199.1-P	Field mustard	plastid	53.11	51.93
HORVU5Hr1G122340.1	Barley	plastid	51.98	47.18
PGSC0003DMT400073383	Potato	mitochondrion	28.25	29.41
PGSC0003DMT400011370	Potato	plastid	33.9	20.27

Protein Annotations

EntrezGene:102597394	Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like
InterPro:Glutaredoxin	InterPro:IPR002109	UniProt:M1B2B4	InterPro:Monothiol_GRX-rel	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400013635
PGSC:PGSC0003DMG400013635	EnsemblPlants:PGSC0003DMT400035470	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF37	SUPFAM:SSF52833
TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI000295BF33	RefSeq:XP_006364825.1	:	:

Description

Grx_S14-glutaredoxin subgroup II [Source:PGSC_GENE;Acc:PGSC0003DMG400013635]

Coordinates

chr2:+:37953424..37957403

Molecular Weight (calculated)

19516.6 Da

IEP (calculated)

8.940

GRAVY (calculated)

-0.036

Length

177 amino acids

Sequence
(BLAST)

001: MSLGISLQWQ LPSVIRSTRT SAAQLRTTDV FLSLPTVHSG RALQYSTIPS SSIATGKRDG RLRSIRCLSA LDPNLKSTLD KVVTSQKIVL FMKGTKGIPQ
101: CGFSNTVVQI LKALNAPFET LNILENEALR QGLKEYSSWP TFPQLYIDGE FFGGCDIVVE AYKSGELQEL LERTLCS

Best Arabidopsis Sequence Match ( AT3G54900.1 )
(BLAST)

001: MALRSVKTPT LITSVAVVSS SVTNKPHSIR FSLKPTSALV VHNHQLSFYG SNLKLKPTKF RCSASALTPQ LKDTLEKLVN SEKVVLFMKG TRDFPMCGFS
101: NTVVQILKNL NVPFEDVNIL ENEMLRQGLK EYSNWPTFPQ LYIGGEFFGG CDITLEAFKT GELQEEVEKA MCS

Arabidopsis Description

GRXS14Monothiol glutaredoxin-S14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84Y95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.