Factsheet for PGSC0003DMT400026018

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089950.1.1	Tomato	cytosol	96.83	94.19
VIT_04s0023g01000.t01	Wine grape	cytosol	75.56	77.29
KRH08332	Soybean	cytosol	44.4	73.91
KRH69973	Soybean	cytosol	37.69	72.92
GSMUA_Achr7P08160_001	Banana	cytosol	50.0	70.9
KRH76896	Soybean	cytosol	68.47	70.31
KRH28572	Soybean	cytosol	67.54	70.29
Bra041065.1-P	Field mustard	cytosol	27.61	66.97
GSMUA_Achr2P17200_001	Banana	cytosol	62.13	65.68
CDX77940	Canola	mitochondrion	31.16	65.49
CDX73793	Canola	mitochondrion	9.89	65.43
AT3G50780.1	Thale cress	cytosol	62.69	64.62
Bra041074.1-P	Field mustard	mitochondrion	9.7	64.2
CDX77944	Canola	cytosol	60.82	63.67
CDX77942	Canola	mitochondrion	32.46	63.5
Os12t0596600-01	Rice	cytosol	27.43	63.09
KRH08334	Soybean	cytosol	25.75	62.44
KXG37471	Sorghum	cytosol	60.26	61.41
GSMUA_Achr9P26390_001	Banana	cytosol, nucleus, peroxisome	60.26	61.41
KRH69974	Soybean	cytosol	25.37	61.26
Os03t0769400-01	Rice	cytosol	59.33	60.92
Zm00001d034194_P002	Maize	cytosol	59.7	59.93
TraesCS5D01G414700.1	Wheat	cytosol	57.46	58.78
TraesCS5B01G409500.1	Wheat	cytosol	57.28	58.59
TraesCS5A01G404600.1	Wheat	cytosol	57.28	58.48
Os07t0123500-01	Rice	cytosol	57.28	58.25
HORVU5Hr1G098300.1	Barley	cytosol	56.72	58.13
KXG34316	Sorghum	cytosol	55.41	54.7
HORVU5Hr1G016360.5	Barley	cytosol	53.54	54.67
TraesCS5B01G071200.2	Wheat	cytosol	53.54	54.56
TraesCS5A01G060900.1	Wheat	cytosol	52.99	54.51
GSMUA_Achr6P34610_001	Banana	cytosol	54.66	54.46
TraesCS5D01G072400.2	Wheat	cytosol	52.8	54.01
Zm00001d007975_P001	Maize	cytosol	53.73	52.84
Zm00001d030950_P001	Maize	mitochondrion	48.13	48.68
OQU85769	Sorghum	mitochondrion	12.87	48.25
GSMUA_Achr4P28120_001	Banana	cytosol	56.34	46.39
Zm00001d030947_P001	Maize	plastid	46.64	45.29
OQU79497	Sorghum	mitochondrion	47.39	43.49
Zm00001d020128_P001	Maize	mitochondrion	23.69	41.5
PGSC0003DMT400065249	Potato	plastid	33.96	36.69
PGSC0003DMT400032124	Potato	plastid	37.87	31.62
PGSC0003DMT400012106	Potato	plastid	37.69	31.37
PGSC0003DMT400073782	Potato	cytosol, plastid	25.37	25.0
PGSC0003DMT400001872	Potato	plastid	18.28	19.41

Protein Annotations

EnsemblPlants:PGSC0003DMT400026018	EnsemblPlantsGene:PGSC0003DMG400010040	EntrezGene:102579245	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom_prot	PANTHER:PTHR31060
PANTHER:PTHR31060:SF5	PGSC:PGSC0003DMG400010040	RefSeq:XP_006338266.1	SEG:seg	UniParc:UPI000295D970	UniProt:M1AMH2
MapMan:35.1	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010040]

Coordinates

chr2:+:44759417..44764032

Molecular Weight (calculated)

60212.5 Da

IEP (calculated)

8.320

GRAVY (calculated)

-0.323

Length

536 amino acids

Sequence
(BLAST)

001: MAEIRLTKVE QGQTKIRNVP IAVTPEGFWC CPSPNVFQKS LKTPNPLNKP KSPLPTTQTP AHKKQTSVTE KRPASAAPKS GAVSDEKRGV SADTPTVTAS
101: VPAERTPRSK TENVPRKVSI EFGEPGTSDL RVILLGKQGF TVKLNVHKNI LVENSSFFAN KISVRQPVFP CIEIDDCEDV EICVETIGLM YCKEMKQRLI
201: KQSVSRVLRI IKVAEQLGFK SCMQSCLEYL EAVPWVGEEE EEKVVSSVLR LQSEGIGVTP VLKRVSSDIS KPHKDTFSHI LELVLKSNEE RGRREMKSVV
301: LKLLRENNCL PSSSGSVDSY NEIIYGSCRS CLDSILILFK QAAEPEFSSN STDCREPVVK QIYLEADNLS WMLEILTDRQ AADEFAVMWA SQQELASLHT
401: KLPIVSRHHV SCITAKLFVG IGKGELLPSK DTRNLLLQTW LQPLINDYSW LQHGSRSFDR KVVEEGIGRT ILTLPLEEQQ SILLSWLGSF LKSGDNCPNL
501: QRAFEVWWRR TFVRPYAESG NTRRLDHVTT PKVTEH

Best Arabidopsis Sequence Match ( AT3G50780.2 )
(BLAST)

001: MAEIKNAKVE QRQTKIRNVP VAVTPEGFWC CPSPVAFQKT LKSHNSLTKH KQSSPALQPP KPEKKPSSTT IRSVIASDET QQNLGSFDTV HSIAVPATVQ
101: ERPQRQKVET LPRKVAIEFG EPGSSDAKVI LVGKQGFCVK LSVHKKVLVD HSCFFAKKLA EKDSVFACLE IESCEDAELY VETIGLMYCK DMKQRLMKQN
201: VSRVLRVLKV AELLGFSSCI QSCLDYLEAV PWVGEEEEEK VISSILRLKT EGVGVTPVLK RVASNAVDPP KETLSRIIEL VLRSKEEKSR REMKSIVLKL
301: LREQNGANVA DNFNDTIYSS CQTCLDSVLS LFKQASEGEK PETDTKQIAV EADNLTWLLD VLAERQAAEE FSVTWANQKE LALLHEKLPL MSRYHISRVT
401: SRLFIGIGRG ELLPSKDTRL LLLTTWLQPL FNDYNWLQHG CRSFDGKLVE EGIGRTILTL PLEDQQSILL SWLGSFLNGG DGCPNLQRAF EVWWRRSFIR
501: PYSDRQANGS CQTDSTSKEE

Arabidopsis Description

BTB/POZ domain-containing protein At3g50780 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.