Factsheet for PGSC0003DMT400073782

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g005950.1.1	Tomato	cytosol, plastid	98.35	98.35
VIT_04s0044g01240.t01	Wine grape	nucleus	64.52	63.7
KRH64045	Soybean	plastid	57.9	61.64
KRH53894	Soybean	plastid	56.99	61.63
KRH59568	Soybean	mitochondrion, plastid	58.09	61.6
HORVU5Hr1G119090.1	Barley	cytosol	17.28	59.87
AT2G13690.1	Thale cress	cytosol, plastid	52.02	52.02
CDX71164	Canola	cytosol	43.57	49.38
GSMUA_Achr7P03070_001	Banana	mitochondrion	45.04	46.93
OQU90655	Sorghum	mitochondrion	44.12	45.54
Os04t0278000-01	Rice	mitochondrion, plastid	43.57	44.97
Zm00001d012880_P001	Maize	mitochondrion	41.91	44.79
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	42.1	44.29
TraesCS4A01G349300.1	Wheat	mitochondrion	42.65	43.45
TraesCS5B01G523400.1	Wheat	mitochondrion	42.83	43.39
HORVU5Hr1G119100.2	Barley	cytosol	35.11	42.83
Os07t0259700-01	Rice	mitochondrion	43.57	42.02
Zm00001d005480_P001	Maize	cytosol, plastid	41.73	40.68
KXG34836	Sorghum	mitochondrion, plastid	43.2	40.17
EES15778	Sorghum	plastid	36.95	38.8
Os12t0188500-01	Rice	plastid	36.4	37.79
Zm00001d019337_P003	Maize	plastid	40.44	37.29
Zm00001d041800_P001	Maize	plastid	35.66	36.53
PGSC0003DMT400065249	Potato	plastid	24.82	27.22
PGSC0003DMT400026018	Potato	cytosol	25.0	25.37
PGSC0003DMT400012106	Potato	plastid	27.94	23.6
PGSC0003DMT400032124	Potato	plastid	27.76	23.52
PGSC0003DMT400001872	Potato	plastid	15.99	17.23

Protein Annotations

EnsemblPlants:PGSC0003DMT400073782	EnsemblPlantsGene:PGSC0003DMG400028664	EntrezGene:107061280	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:BTB/POZ_dom	InterPro:BTB/POZ_dom_prot	InterPro:IPR000210	PANTHER:PTHR31060	PANTHER:PTHR31060:SF2	PFscan:PS50097
PGSC:PGSC0003DMG400028664	RefSeq:XP_015165756.1	SEG:seg	UniParc:UPI000295C956	UniProt:M1CSN5	MapMan:35.1

Description

Transcription regulator [Source:PGSC_GENE;Acc:PGSC0003DMG400028664]

Coordinates

chr11:-:6721690..6726686

Molecular Weight (calculated)

61552.1 Da

IEP (calculated)

8.246

GRAVY (calculated)

-0.353

Length

544 amino acids

Sequence
(BLAST)

001: MHDPTRLKSQ PHHHNRRREP PSHHRRAWCC SFTVPPHSPE NPAVVPAQNP KKTQSFLKPE VPTKSSSNSL SSFPNSPQNP SKLTRIDPRR ILSPGRVSPI
101: DSIDETLNPT GPVSFPEIPK SPTPVDCEQQ ASGGVGVRDD CSLGIFDVRL NLKGKNGGGL VLELSSEVLS TNSSVFADLI ADYRKNSRGL CRIEVPDVEN
201: LGVFRDTIEL MFEDDIPRKL LRVGAYRAID VLEVSAGIKF NRSVLSCLKY LEAVPWTEEE EEKLRRLFNK MKFDHETARD ISARLYALDM TDSQQTLSKQ
301: LVWSVTTCID ANSRNELKSL VKGLLCKSSV YEKDCSDLNK VDIFAICLSC ISSLVSLLEE ATATSPSVKL TKKEDRTLID RISKQVDNII WLLEILLDHQ
401: MAEDLVDIWT KQSQLLAMHK CASPLVRYEL SRVTAMLFIA MGTGKMHCRS EARSGLLQTW FRPMLLDFGW LQRCKKGLDM KALEEAMGQA LLTLPLKEQY
501: VLFMDWFKCF SKHGTECPNL SKSFQIWWRR SFLRGSETHA SESR

Best Arabidopsis Sequence Match ( AT2G13690.1 )
(BLAST)

001: MTMGDSDLRK PTNFGTGHLS RRRSWCCSFA VPPASPDTRS ISSRNHIPAK SQQQRPKLVP CSPQSSKSAL NIVNRIDPRR ILSPGRVSPI DSDPTVTTMQ
101: ETETTQEEED DAVVVDSTPN LRSESFRAPK IEVTGSGLSE GYDARLSLKG RNGGGVLVLE LSLEVLAANS DVFSGLIAEE KKCSSSSSSL GLKNTCRIEV
201: CDVENLGVFR ETVELMFEES NVIIKKFMTM GVYRAIDVLE VAAGIKFSRA VLSCLKYLEA VPWTEDEEEK LRRLLGIYSF DDDAVSEILA RFNSNETENL
301: QDSLSKKLVW SITSCSDVNP RNELKSLVKG LLCKSSVYEK EQPEINKEDI YRAGKCCVDS LAKLFEEGSS SSSSKKEKPL IESISREVEN INWLLEIMID
401: REIAEEFVEI WGKQRRLVEM HERVSPMVRY EVSRVTGAIF IAMGKRRVQC GGEARAGLVE AWFKPMLVDF GWLQRCKKGL DMREVEEGMG QTLLTLPVKE
501: QYQVFMEWFR WFSKHGTECP NLSKAFQIWW RRSFLRGVES STCR

Arabidopsis Description

PRL1-IFGBTB/POZ domain-containing protein At2g13690 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKH2]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.