Factsheet for VIT_04s0044g01240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53894	Soybean	plastid	63.88	69.98
KRH64045	Soybean	plastid	64.25	69.28
KRH59568	Soybean	mitochondrion, plastid	61.71	66.28
PGSC0003DMT400073782	Potato	cytosol, plastid	63.7	64.52
Solyc11g005950.1.1	Tomato	cytosol, plastid	63.16	63.97
HORVU5Hr1G119090.1	Barley	cytosol	17.42	61.15
AT2G13690.1	Thale cress	cytosol, plastid	55.17	55.88
CDX71164	Canola	cytosol	45.73	52.5
GSMUA_Achr7P03070_001	Banana	mitochondrion	48.64	51.34
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	46.28	49.32
Zm00001d012880_P001	Maize	mitochondrion	44.65	48.33
Os04t0278000-01	Rice	mitochondrion, plastid	46.1	48.2
OQU90655	Sorghum	mitochondrion	45.37	47.44
Zm00001d005480_P001	Maize	cytosol, plastid	46.82	46.24
TraesCS5B01G523400.1	Wheat	mitochondrion	45.01	46.18
TraesCS4A01G349300.1	Wheat	mitochondrion	44.65	46.07
Os07t0259700-01	Rice	mitochondrion	47.01	45.92
HORVU5Hr1G119100.2	Barley	cytosol	36.66	45.29
KXG34836	Sorghum	mitochondrion, plastid	47.55	44.79
Zm00001d019337_P003	Maize	plastid	44.65	41.69
EES15778	Sorghum	plastid	37.57	39.96
Os12t0188500-01	Rice	plastid	37.93	39.89
Zm00001d041800_P001	Maize	plastid	36.48	37.85
VIT_06s0004g03710.t01	Wine grape	plastid	25.95	29.48
VIT_04s0023g01000.t01	Wine grape	cytosol	27.22	28.63
VIT_02s0025g00150.t01	Wine grape	plastid	31.4	25.94
VIT_03s0063g02520.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	16.88	19.06

Protein Annotations

ArrayExpress:VIT_04s0044g01240	EMBL:FN596506	EnsemblPlants:VIT_04s0044g01240.t01	EnsemblPlantsGene:VIT_04s0044g01240	EntrezGene:100260878	EntrezGene:LOC100260878
InterPro:BTB/POZ_dom_prot	PANTHER:PTHR31060	PANTHER:PTHR31060:SF2	ProteinID:CCB60416	ProteinID:CCB60416.1	RefSeq:XP_002274417
RefSeq:XP_002274417.2	SEG:seg	TIGR:TC60300	UniParc:UPI00021094A9	UniProt:F6I0F0	wikigene:100260878
wikigene:LOC100260878	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4:+:22732921..22740099

Molecular Weight (calculated)

62178.9 Da

IEP (calculated)

8.047

GRAVY (calculated)

-0.322

Length

551 amino acids

Sequence
(BLAST)

001: MDDITRRRPR ARREPQPRRR SWCCSFSVPP TSPEHLRVSQ PKPLQKFETL SKSGNSFPNS PQSARSGLGL VGRIDPRRIL SPGRVSPIDS DPSGDLVHDI
101: LVDPSPVRDT GVRSASFRAP LENFRAPPEG SASPGSCNVV KEGENGAGVF DVRLNLKGKH GGSLVLELNS EVLSANSSVF ADLISDYRKG CSGPAAKLCR
201: IEVPEVEHLG VFRETIELMF EEDITKRLLK AGVYRSIDIL EVSAGIMFTK GVLSCLKYLE AVPWSEEEEE KLRSVFERFK FDGATTKDIL ARLYPLDSGD
301: SQGNLARQLV WSITTCVDTN ARNELKLLVK GLLCKSSVYE KDRSDINKED LYGVCQSCLG SLVTLFEEAT NCSERLAKKE MDKPLIERIS RQVDNINWLL
401: DILVDRQIAE EFVEMWASQA ELLRMHENTS PMVRYELSRV SAILFIAVGT RKMHCRTEAR LGLLQAWFGP MVLDFGWLQR CKKGLDMKAL EEAMGQALLT
501: LPLKHQYMLF MEWFRCFSKH GTECPNLSKA FQIWWRRSFL RGSESHAIES R

Best Arabidopsis Sequence Match ( AT2G13690.1 )
(BLAST)

001: MTMGDSDLRK PTNFGTGHLS RRRSWCCSFA VPPASPDTRS ISSRNHIPAK SQQQRPKLVP CSPQSSKSAL NIVNRIDPRR ILSPGRVSPI DSDPTVTTMQ
101: ETETTQEEED DAVVVDSTPN LRSESFRAPK IEVTGSGLSE GYDARLSLKG RNGGGVLVLE LSLEVLAANS DVFSGLIAEE KKCSSSSSSL GLKNTCRIEV
201: CDVENLGVFR ETVELMFEES NVIIKKFMTM GVYRAIDVLE VAAGIKFSRA VLSCLKYLEA VPWTEDEEEK LRRLLGIYSF DDDAVSEILA RFNSNETENL
301: QDSLSKKLVW SITSCSDVNP RNELKSLVKG LLCKSSVYEK EQPEINKEDI YRAGKCCVDS LAKLFEEGSS SSSSKKEKPL IESISREVEN INWLLEIMID
401: REIAEEFVEI WGKQRRLVEM HERVSPMVRY EVSRVTGAIF IAMGKRRVQC GGEARAGLVE AWFKPMLVDF GWLQRCKKGL DMREVEEGMG QTLLTLPVKE
501: QYQVFMEWFR WFSKHGTECP NLSKAFQIWW RRSFLRGVES STCR

Arabidopsis Description

PRL1-IFGBTB/POZ domain-containing protein At2g13690 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKH2]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.