Factsheet for VIT_06s0004g03710.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072720.1.1	Tomato	plastid	70.31	68.47
PGSC0003DMT400065249	Potato	plastid	69.28	67.74
Solyc11g072900.1.1	Tomato	cytosol	36.91	67.29
KRG88696	Soybean	plastid	67.22	65.99
KRH24978	Soybean	plastid	67.63	65.21
CDY09229	Canola	plastid	66.19	64.59
Bra020266.1-P	Field mustard	plastid	65.77	64.44
AT5G60050.1	Thale cress	cytosol, plastid	65.15	63.33
GSMUA_Achr4P30630_001	Banana	cytosol	57.73	54.69
GSMUA_Achr9P28400_001	Banana	cytosol	57.73	54.69
VIT_02s0025g00150.t01	Wine grape	plastid	50.31	36.58
VIT_04s0023g01000.t01	Wine grape	cytosol	38.56	35.69
VIT_04s0044g01240.t01	Wine grape	nucleus	29.48	25.95
VIT_03s0063g02520.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	19.59	19.47

Protein Annotations

ArrayExpress:VIT_06s0004g03710	EMBL:FN594951	EnsemblPlants:VIT_06s0004g03710.t01	EnsemblPlantsGene:VIT_06s0004g03710	EntrezGene:100267382	EntrezGene:LOC100267382
InterPro:BTB/POZ_dom_prot	PANTHER:PTHR31060	PANTHER:PTHR31060:SF12	ProteinID:CCB43625	ProteinID:CCB43625.1	RefSeq:XP_002281741
RefSeq:XP_002281741.1	SEG:seg	UniParc:UPI000210A2F3	UniProt:F6GTW1	wikigene:100267382	wikigene:LOC100267382
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:4676213..4678504

Molecular Weight (calculated)

55430.5 Da

IEP (calculated)

5.674

GRAVY (calculated)

-0.276

Length

485 amino acids

Sequence
(BLAST)

001: MIKQGFISDP TITFSPSRPL SRVSLSPPPP SASPSKSPTL FEMMSEEQSR ESRHSDVARR KLQDQVARVL ADAPFRDPAW GEFGDVKLTV ASRDGFKVSM
101: DVHRRVLVEQ SRFFAEKLRR DGAVSHSVEI CDCDDVEIYV ETVVLMYCED LRKRLMGEEV SKVLGLLKVS AAIMFDAGII SCLEFLEAVP WSEDEEEKVV
201: SHLGQLQLHD SVAEVLQRVS AEPSTSTRPD DIFLRLLTGI LQAKDDKARR EMKTLISRLL RDEAPDNSDR HDVSKDTLYH LCHRCLSSLV LCLSEATCTD
301: ESIRDRGAIM SEIAREADNM QWIVNILIDK KMGEDFVKLW ADQKELAVLH SKIPTMYRHE ISKITAQLCI AIGRGHLLVP KDTRFSLLST WLEALYEDFA
401: WMRRACRSVD KKLVEDGLSQ TILTLPLPQQ QAILLTWFDR FLNKGDDCPN IQRAFEVWWR RAFIRQYVSE HDNSQLQITV CDYPN

Best Arabidopsis Sequence Match ( AT5G60050.1 )
(BLAST)

001: MASREVSTMI KQGFIADPSL SFSPSRISSP IKLSTASPPL PPPPPPPPNE STLSNPTLFD MMSDEHNREL PRRKSHARVA QILTEFKNGV VYGHSLGPGD
101: VKLTVVGKDG YRVTMDVHRK VLSEKSRFFM EKMNSRREKG VSHMVEISEC DDLEIYVETV VLMYSDDLKK KLIGENVIKI LALLKVSAAI SFDEGVMSCL
201: EHLEAVPWSE DEEETVVTCL EELHLPDDSV TLILQRVSSQ PSTSSTRTRT DDIFSKLLTG VLQAKDDKAR REMKVLIFKL VREEADYDVS RDTLYGLCHR
301: CLTSLVLCLS EVTTQMNDPG KDRGALMGEI AREADNMLWM VDILIEKKLC SEFVKLWADQ KELANLHSKI PTMYRHEISK ITAQICVGIG KGRILVNRET
401: RFAVLNTWLE ALYDDFGWMR RLSSRSLDRK LVEDGLSQTI LTLSLRQQQV ILMKWFDRFL SKGDDCPNVQ RAFEVWWRRA FIRQVLTEPD EPRLQITLY

Arabidopsis Description

BTB/POZ domain-containing protein At5g60050 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVG9]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.