Factsheet for VIT_02s0025g00150.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41224	Soybean	mitochondrion	65.22	80.86
KRH59948	Soybean	cytosol, plastid	64.17	75.89
PGSC0003DMT400032124	Potato	plastid	69.57	72.27
Solyc08g081380.2.1	Tomato	plastid	69.12	72.26
PGSC0003DMT400012106	Potato	plastid	69.12	71.58
CDY08328	Canola	cytosol, plastid	56.37	70.68
Bra027781.1-P	Field mustard	plastid	56.37	70.41
CDY38217	Canola	plastid	56.07	70.17
AT1G63850.1	Thale cress	cytosol	57.42	69.89
GSMUA_Achr1P03700_001	Banana	plastid	53.22	68.14
Os04t0579700-01	Rice	cytosol	53.97	67.54
GSMUA_Achr5P10260_001	Banana	plastid	54.72	66.24
HORVU0Hr1G005290.1	Barley	cytosol	45.28	63.71
GSMUA_Achr4P24950_001	Banana	plastid	47.83	63.04
TraesCS2B01G413600.1	Wheat	cytosol, plastid	56.22	61.17
Zm00001d026051_P002	Maize	cytosol, mitochondrion, plastid	55.47	61.06
KXG26972	Sorghum	plastid	55.47	60.96
HORVU2Hr1G094080.1	Barley	cytosol	56.67	58.51
VIT_06s0004g03710.t01	Wine grape	plastid	36.58	50.31
VIT_04s0023g01000.t01	Wine grape	cytosol	31.78	40.46
VIT_04s0044g01240.t01	Wine grape	nucleus	25.94	31.4
VIT_03s0063g02520.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	16.49	22.54

Protein Annotations

EntrezGene:100257094	wikigene:100257094	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	InterPro:BTB/POZ_dom_prot
ProteinID:CCB58188	ProteinID:CCB58188.1	UniProt:F6HUM2	EMBL:FN596251	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000210	EntrezGene:LOC100257094	wikigene:LOC100257094	PFscan:PS50097	PANTHER:PTHR31060
PANTHER:PTHR31060:SF3	TIGR:TC58268	UniParc:UPI0002108307	ArrayExpress:VIT_02s0025g00150	EnsemblPlantsGene:VIT_02s0025g00150	EnsemblPlants:VIT_02s0025g00150.t01
unigene:Vvi.17910	RefSeq:XP_002279382	RefSeq:XP_002279382.1	RefSeq:XP_002279382.2	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:303759..306573

Molecular Weight (calculated)

73800.5 Da

IEP (calculated)

7.909

GRAVY (calculated)

-0.271

Length

667 amino acids

Sequence
(BLAST)

001: MATTTTHLKI QTQPIKPKRR RCRETTISAT ASAVATVGAA AESSVGHLGQ VGRKLDPPTV VSSESSWCCP ASKPFPVGPP PPPPPPPLPR LPTALQRRGV
101: TSLSSSQETE LVQGSIASSP SESPSPSLAP STFKIRFSPG TNSPVMDFTP ISGTAINGGA AHDSFPSSFS KFNSALTAGL LNPMSPPPPP PSEKTRSSPT
201: LFEMMASEPE CQPRPQIAPS MGPVSVLRPP ISVQDKSALM MQRISEILAS RSPGNQFNDM SSSDIKLTLS SKDGVSISMS VHRQILVAHS RFFAAKLSDR
301: WTRQQQRSAS PYIVEIADCD DVEIYIETLR LMYCKDLRKK LMKEDVSRVL GILKVSAAIE FDAGVLSCLE YLEAAPWAED EEEKVAALLS ELRLEGVVAG
401: EVLKRVSVEI TAGTEESNEN EEVLLKLLHV VLEGKDEKAR REMKGLVLKM LRENASQNDL RKESLYSACD GCLELLRLHF LRAAASDLQD VGQIARQADN
501: LHWILDILID RQIAEDFLKT WASQSELSHA HSKVPVVHRY EVSRVTARLF VGIGKGQLLA SKDARCLLLQ TWLVPFYDDF GWMRRASKGL DRHLVEDGLS
601: NTILTLPLAW QQEILLAWFD RFLNSGEDCP NIQRGFEVWW RRAFWRRHGK TERPRQLRIT TATIENS

Best Arabidopsis Sequence Match ( AT1G63850.1 )
(BLAST)

001: MDYSTATTTA GNGYSSPRDS SFPSSFTKFN SALTAGLLNP MSPPPPPAMH DKTRSSPTLF EMMASEADTI GKVPVQIHNG VLPSPSSSSS SSSAAATAAR
101: TTNVNHLVIS AQDKQALAMQ RISDLLVIRS PGNQFNDPNS SDVKLTLSSK DGISITMCVH RQILVAHSRF FAMKLSDRWS KQQLPPSSSP YIVEISDCDD
201: VEVYIETLML MYCRDLRKKM MRHDVSRVLG ILKVSAAIGF DAGVLSCLEY LEAAPWSEDE EYRIASLLSE LHLENVGATE VLRRVSVEAS NGNNGSNGGS
301: NDEVLLNLLH IVLEGKDEKA RRDMKTLVSK MLRENSSGND LRKESLYLAC DGCLHKLKRQ FLQAAESDLE NVDQIARQAD NLHWILDILI DRQIAEDFIV
401: MWASLSELSE VHSKVPVVHR FEISRVTARI FVGIGKGQIL TPKEVRCLLL RNWLTPFYDD FGWMRRASKG LDRYLIEDGL SNTILTLPLA WQQEFFLAWF
501: DRFLNSNEDC PNIQRGFEVW WRRAFWRRKE QSQEPARLRV TASATENS

Arabidopsis Description

BTB/POZ domain-containing protein At1g63850 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.