Factsheet for VIT_04s0023g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08332	Soybean	cytosol	47.71	77.64
KRH69973	Soybean	cytosol	40.65	76.9
PGSC0003DMT400026018	Potato	cytosol	77.29	75.56
KRH28572	Soybean	cytosol	73.28	74.56
KRH76896	Soybean	cytosol	74.24	74.52
Solyc02g089950.1.1	Tomato	cytosol	76.53	72.78
GSMUA_Achr7P08160_001	Banana	cytosol	51.91	71.96
Bra041065.1-P	Field mustard	cytosol	29.77	70.59
GSMUA_Achr2P17200_001	Banana	cytosol	65.84	68.05
KRH69974	Soybean	cytosol	28.63	67.57
AT3G50780.1	Thale cress	cytosol	66.6	67.12
KRH08334	Soybean	cytosol	28.24	66.97
Os12t0596600-01	Rice	cytosol	29.77	66.95
CDX77944	Canola	cytosol	65.27	66.8
CDX77940	Canola	mitochondrion	32.44	66.67
CDX73793	Canola	mitochondrion	10.31	66.67
Bra041074.1-P	Field mustard	mitochondrion	10.11	65.43
CDX77942	Canola	mitochondrion	34.16	65.33
GSMUA_Achr9P26390_001	Banana	cytosol, nucleus, peroxisome	64.5	64.26
KXG37471	Sorghum	cytosol	64.31	64.07
Os03t0769400-01	Rice	cytosol	63.55	63.79
TraesCS5B01G409500.1	Wheat	cytosol	62.79	62.79
Zm00001d034194_P002	Maize	cytosol	63.93	62.73
HORVU5Hr1G098300.1	Barley	cytosol	62.4	62.52
TraesCS5A01G404600.1	Wheat	cytosol	62.6	62.48
TraesCS5D01G414700.1	Wheat	cytosol	62.21	62.21
Os07t0123500-01	Rice	cytosol	61.26	60.91
TraesCS5A01G060900.1	Wheat	cytosol	57.25	57.58
HORVU5Hr1G016360.5	Barley	cytosol	57.44	57.33
KXG34316	Sorghum	cytosol	59.35	57.27
TraesCS5B01G071200.2	Wheat	cytosol	57.25	57.03
GSMUA_Achr6P34610_001	Banana	cytosol	58.21	56.69
TraesCS5D01G072400.2	Wheat	cytosol	56.68	56.68
Zm00001d007975_P001	Maize	cytosol	56.87	54.68
Zm00001d030950_P001	Maize	mitochondrion	50.76	50.19
OQU85769	Sorghum	mitochondrion	13.17	48.25
GSMUA_Achr4P28120_001	Banana	cytosol	59.35	47.77
Zm00001d030947_P001	Maize	plastid	49.43	46.92
OQU79497	Sorghum	mitochondrion	49.62	44.52
Zm00001d020128_P001	Maize	mitochondrion	25.76	44.12
VIT_06s0004g03710.t01	Wine grape	plastid	35.69	38.56
VIT_02s0025g00150.t01	Wine grape	plastid	40.46	31.78
VIT_04s0044g01240.t01	Wine grape	nucleus	28.63	27.22
VIT_03s0063g02520.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	20.61	22.13

Protein Annotations

EntrezGene:100252985	wikigene:100252985	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	InterPro:BTB/POZ_dom_prot
ProteinID:CBI17589	ProteinID:CBI17589.3	UniProt:D7SPL0	EMBL:FN594959	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000210	EntrezGene:LOC100252985	wikigene:LOC100252985	PFAM:PF00651	PANTHER:PTHR31060
PANTHER:PTHR31060:SF5	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI00015CB2AD	ArrayExpress:VIT_04s0023g01000	EnsemblPlantsGene:VIT_04s0023g01000
EnsemblPlants:VIT_04s0023g01000.t01	unigene:Vvi.2867	RefSeq:XP_002275454	RefSeq:XP_002275454.1	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:17421368..17424840

Molecular Weight (calculated)

59013.4 Da

IEP (calculated)

7.013

GRAVY (calculated)

-0.262

Length

524 amino acids

Sequence
(BLAST)

001: MAEIRLTKVE QGQTKIRNVP IAVTPEGFWC CPSPVVFQKT LKAQNPLNKP KSSPPPPTKT SVQKKQAPMT ERKPTSTPSR PGVVSDDQRT FASDAPALSA
101: LVNERAPRPK IENLPRKVAI EFGEPGTSDM KVILMGKQGF YVKLSVHKNV LMENSSFFAD KLSEEQSNLS CLEIEDCEDI EIYVETVGLM YCKETKQRLI
201: KQSVSRVLRI LKVAELLGFN SCMQSCLEYL EAVPWVGEEE EEKVVSSVLQ LQVEGIGVTP VLKRVSSEVS NCPKDTLFHI MELVLKSSEE RGRREMKSIV
301: LKLLRENSSV PSYAGSADIC NETIYSSCRS CLDSLLSMFR QAAEPGFTDK PMENKEPVLK QITLEADNLS WLLEILADRQ AADEFAVMWA SQQELATLHT
401: KLPVVSRHHV SCITARLFVG IGRGELLPSK DTRQLLLQTW LQPLINDYSW LQHGCRSFDR KVVEEGIGRT ILTLPLEDQQ SILLAWLGSF LKAGDNCPNL
501: QRAFEVWWRR TFVRPYVEPQ GNLM

Best Arabidopsis Sequence Match ( AT3G50780.2 )
(BLAST)

001: MAEIKNAKVE QRQTKIRNVP VAVTPEGFWC CPSPVAFQKT LKSHNSLTKH KQSSPALQPP KPEKKPSSTT IRSVIASDET QQNLGSFDTV HSIAVPATVQ
101: ERPQRQKVET LPRKVAIEFG EPGSSDAKVI LVGKQGFCVK LSVHKKVLVD HSCFFAKKLA EKDSVFACLE IESCEDAELY VETIGLMYCK DMKQRLMKQN
201: VSRVLRVLKV AELLGFSSCI QSCLDYLEAV PWVGEEEEEK VISSILRLKT EGVGVTPVLK RVASNAVDPP KETLSRIIEL VLRSKEEKSR REMKSIVLKL
301: LREQNGANVA DNFNDTIYSS CQTCLDSVLS LFKQASEGEK PETDTKQIAV EADNLTWLLD VLAERQAAEE FSVTWANQKE LALLHEKLPL MSRYHISRVT
401: SRLFIGIGRG ELLPSKDTRL LLLTTWLQPL FNDYNWLQHG CRSFDGKLVE EGIGRTILTL PLEDQQSILL SWLGSFLNGG DGCPNLQRAF EVWWRRSFIR
501: PYSDRQANGS CQTDSTSKEE

Arabidopsis Description

BTB/POZ domain-containing protein At3g50780 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.