Factsheet for GSMUA_Achr4P28120_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P08160_001	Banana	cytosol	41.47	71.43
GSMUA_Achr2P17200_001	Banana	cytosol	54.84	70.41
GSMUA_Achr9P26390_001	Banana	cytosol, nucleus, peroxisome	52.23	64.64
Os12t0596600-01	Rice	cytosol	21.81	60.94
VIT_04s0023g01000.t01	Wine grape	cytosol	47.77	59.35
GSMUA_Achr6P34610_001	Banana	cytosol	48.85	59.11
KRH69973	Soybean	cytosol	24.88	58.48
KRH08332	Soybean	cytosol	28.57	57.76
TraesCS5A01G060900.1	Wheat	cytosol	45.16	56.43
HORVU5Hr1G016360.5	Barley	cytosol	45.47	56.38
PGSC0003DMT400026018	Potato	cytosol	46.39	56.34
TraesCS5D01G072400.2	Wheat	cytosol	45.01	55.92
TraesCS5B01G071200.2	Wheat	cytosol	45.01	55.7
Bra041065.1-P	Field mustard	cytosol	18.74	55.2
CDX77940	Canola	mitochondrion	21.2	54.12
Solyc02g089950.1.1	Tomato	cytosol	45.31	53.54
KRH28572	Soybean	cytosol	42.09	53.2
KRH76896	Soybean	cytosol	42.55	53.07
CDX77942	Canola	mitochondrion	22.12	52.55
OQU85769	Sorghum	mitochondrion	11.21	51.05
CDX77944	Canola	cytosol	39.78	50.59
AT3G50780.1	Thale cress	cytosol	40.4	50.58
Zm00001d030950_P001	Maize	mitochondrion	39.94	49.06
CDX73793	Canola	mitochondrion	5.99	48.15
Zm00001d030947_P001	Maize	plastid	39.78	46.92
Bra041074.1-P	Field mustard	mitochondrion	5.84	46.91
KRH69974	Soybean	cytosol	15.51	45.5
KRH08334	Soybean	cytosol	15.36	45.25
OQU79497	Sorghum	mitochondrion	40.4	45.03
GSMUA_Achr1P03700_001	Banana	plastid	25.35	31.67
GSMUA_Achr4P24950_001	Banana	plastid	24.27	31.23
GSMUA_Achr5P10260_001	Banana	plastid	25.81	30.49
GSMUA_Achr4P30630_001	Banana	cytosol	22.89	29.1
GSMUA_Achr9P28400_001	Banana	cytosol	21.97	27.93
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	20.58	25.92
GSMUA_Achr7P03070_001	Banana	mitochondrion	19.35	24.14
GSMUA_Achr6P24460_001	Banana	cytosol	5.68	23.57
GSMUA_Achr3P26130_001	Banana	mitochondrion	13.36	18.35

Protein Annotations

Gene3D:3.30.710.10	Gene3D:3.60.10.10	MapMan:50.3.1	InterPro:BTB/POZ_dom	InterPro:BTB/POZ_dom_prot	InterPro:Endo/exonu/phosph_ase_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G28120_001	EnsemblPlants:GSMUA_Achr4P28120_001	EnsemblPlants:GSMUA_Achr4T28120_001
InterPro:IPR000210	InterPro:IPR036691	UniProt:M0SSS4	PFAM:PF00651	PFscan:PS50097	PANTHER:PTHR31060
PANTHER:PTHR31060:SF5	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	SUPFAM:SSF56219	UniParc:UPI000296C266	SEG:seg

Description

H-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G28120_001]

Coordinates

chr4:-:26644897..26648497

Molecular Weight (calculated)

73303.4 Da

IEP (calculated)

8.482

GRAVY (calculated)

-0.260

Length

651 amino acids

Sequence
(BLAST)

001: MTDFRVRKLG QGQMKARNVP VAVTPEGFWC CPSPAVLQKT IKNQNHQNKK KILSTMPSKA SSVQRPISSP VDKGTLSDPL SSRVCSEDNS CLTSDTAAKS
101: PTKAAEGLSK LNVGNQHQKI SVGFGQPETS DLKIILFGKE GIAVEMSVHK AILTEHSSFF ADKFSRQSPV PFFEISDCED VEIYVETVGL MYCGEVKHRV
201: IKQSVSRVLR ILKVAESLGF HACIKACLDY LEVVPWVGEE GNVVSSVQHL QSKNYSISPI LKRVFSDTSK PPNDTLAHIM ELVLRSNEER GRREMKSLVL
301: KLLKENSFWT DGSVDICIGT LYSLCQSCLA SLIELFRQAS KSTRIESKDP TVRKIALEAE NLLWLVEILA VRHTADEFAL MWASQNELAQ LHSKLPVMSR
401: HRVSCITARL FVGIGRGEML PSKETRQLLL HVWLQPLVDD YSWLQHGCRQ FDRKVVEEGI GQTILTLPLE DQQSVLLSWL ESFLKECKEC RGEELEVQSH
501: LPFTPLQGSA SACRAISCHR VAGRPQQQNT GDKDTMPGRS LIHKNLHRII AFSWFMFNIY HRCSMAKISC YKPTYKSNVD SNNYDTSCKI RVPARTDRIL
601: FKVEHDHGID AILNSYESID YIKSSDHKPV KAHLCLKLNS HSDLYRSTTL I

Best Arabidopsis Sequence Match ( AT3G50780.2 )
(BLAST)

001: MAEIKNAKVE QRQTKIRNVP VAVTPEGFWC CPSPVAFQKT LKSHNSLTKH KQSSPALQPP KPEKKPSSTT IRSVIASDET QQNLGSFDTV HSIAVPATVQ
101: ERPQRQKVET LPRKVAIEFG EPGSSDAKVI LVGKQGFCVK LSVHKKVLVD HSCFFAKKLA EKDSVFACLE IESCEDAELY VETIGLMYCK DMKQRLMKQN
201: VSRVLRVLKV AELLGFSSCI QSCLDYLEAV PWVGEEEEEK VISSILRLKT EGVGVTPVLK RVASNAVDPP KETLSRIIEL VLRSKEEKSR REMKSIVLKL
301: LREQNGANVA DNFNDTIYSS CQTCLDSVLS LFKQASEGEK PETDTKQIAV EADNLTWLLD VLAERQAAEE FSVTWANQKE LALLHEKLPL MSRYHISRVT
401: SRLFIGIGRG ELLPSKDTRL LLLTTWLQPL FNDYNWLQHG CRSFDGKLVE EGIGRTILTL PLEDQQSILL SWLGSFLNGG DGCPNLQRAF EVWWRRSFIR
501: PYSDRQANGS CQTDSTSKEE

Arabidopsis Description

BTB/POZ domain-containing protein At3g50780 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.