Factsheet for GSMUA_Achr10P04560_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G119090.1	Barley	cytosol	21.66	71.34
GSMUA_Achr7P03070_001	Banana	mitochondrion	67.89	67.24
Os04t0278000-01	Rice	mitochondrion, plastid	57.83	56.74
OQU90655	Sorghum	mitochondrion	55.51	54.46
Zm00001d012880_P001	Maize	mitochondrion	53.0	53.83
TraesCS5B01G523400.1	Wheat	mitochondrion	54.35	52.33
TraesCS4A01G349300.1	Wheat	mitochondrion	53.77	52.06
HORVU5Hr1G119100.2	Barley	cytosol	44.87	52.02
Os07t0259700-01	Rice	mitochondrion	56.29	51.6
Zm00001d005480_P001	Maize	cytosol, plastid	53.19	49.28
KXG34836	Sorghum	mitochondrion, plastid	55.13	48.72
KRH64045	Soybean	plastid	47.58	48.14
KRH59568	Soybean	mitochondrion, plastid	47.0	47.37
KRH53894	Soybean	plastid	45.84	47.12
Zm00001d019337_P003	Maize	plastid	53.38	46.78
VIT_04s0044g01240.t01	Wine grape	nucleus	49.32	46.28
PGSC0003DMT400073782	Potato	cytosol, plastid	44.29	42.1
Solyc11g005950.1.1	Tomato	cytosol, plastid	43.91	41.73
EES15778	Sorghum	plastid	41.78	41.7
AT2G13690.1	Thale cress	cytosol, plastid	43.71	41.54
CDX71164	Canola	cytosol	36.75	39.58
Os12t0188500-01	Rice	plastid	39.27	38.74
Zm00001d041800_P001	Maize	plastid	39.46	38.42
GSMUA_Achr7P08160_001	Banana	cytosol	23.79	32.54
GSMUA_Achr1P03700_001	Banana	plastid	30.75	30.52
GSMUA_Achr4P24950_001	Banana	plastid	28.24	28.85
GSMUA_Achr9P26390_001	Banana	cytosol, nucleus, peroxisome	29.21	28.71
GSMUA_Achr2P17200_001	Banana	cytosol	27.85	28.4
GSMUA_Achr5P10260_001	Banana	plastid	29.79	27.95
GSMUA_Achr6P34610_001	Banana	cytosol	27.85	26.77
GSMUA_Achr9P28400_001	Banana	cytosol	24.95	25.2
GSMUA_Achr4P30630_001	Banana	cytosol	24.95	25.2
GSMUA_Achr4P28120_001	Banana	cytosol	25.92	20.58
GSMUA_Achr3P26130_001	Banana	mitochondrion	16.63	18.14
GSMUA_Achr6P24460_001	Banana	cytosol	5.42	17.83

Protein Annotations

EnsemblPlants:GSMUA_Achr10P04560_001	EnsemblPlants:GSMUA_Achr10T04560_001	EnsemblPlantsGene:GSMUA_Achr10G04560_001	InterPro:BTB/POZ_dom_prot	ncoils:Coil	PANTHER:PTHR31060
PANTHER:PTHR31060:SF2	SEG:seg	UniParc:UPI000296C87A	UniProt:M0RFD3	MapMan:35.1	:

Description

H-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G04560_001]

Coordinates

chr10:+:14186434..14189507

Molecular Weight (calculated)

58278.9 Da

IEP (calculated)

7.415

GRAVY (calculated)

-0.421

Length

517 amino acids

Sequence
(BLAST)

001: MADARRRSPG LRRALCCTFA ASTQSPDRPR HDCPHPRRRP SKPPPKTPCP GSLHSSPSPT SRLGLGIIDR RRILSPGRVS PIDSDAPLGP LPEISDSVSL
101: ASENPDAENR GCFGESGSEL KLSLKGKDGR CLVLELEPGI LSESSALLAA MLSKSARQVP DASGDSCKIE FSGLENVDVF KETIELMYAK DAARWLIKGG
201: VSRAIDILEV SSTIMFDRGM KSCLRYIEAV PWSENEEEKL KSLFARCKFD EAISEDMLAR LGPQGQNNPE DLAVHLIQSI TNGTNTKARK EMQSLVSGLL
301: SKSSVYQKDP AGVDKERLYD TCHSCLNSLV HLFEEASDRG IVGRMETKPL IERVSKQVEN LNWLLEILME KEMAEDFVHM WANQEELIKM HGRASPMMRY
401: ELSRISASVF IALGRRKLQC HGDERFAVLR AWFEPMLWDF GWLQRCSKGL DMRTLEESLG QALLTLPLKQ QQSFFEEWFR CFAEHGTGCP NLSKAFQVWW
501: RRLFWRSQKH ADEFFNT

Best Arabidopsis Sequence Match ( AT2G13690.1 )
(BLAST)

001: MTMGDSDLRK PTNFGTGHLS RRRSWCCSFA VPPASPDTRS ISSRNHIPAK SQQQRPKLVP CSPQSSKSAL NIVNRIDPRR ILSPGRVSPI DSDPTVTTMQ
101: ETETTQEEED DAVVVDSTPN LRSESFRAPK IEVTGSGLSE GYDARLSLKG RNGGGVLVLE LSLEVLAANS DVFSGLIAEE KKCSSSSSSL GLKNTCRIEV
201: CDVENLGVFR ETVELMFEES NVIIKKFMTM GVYRAIDVLE VAAGIKFSRA VLSCLKYLEA VPWTEDEEEK LRRLLGIYSF DDDAVSEILA RFNSNETENL
301: QDSLSKKLVW SITSCSDVNP RNELKSLVKG LLCKSSVYEK EQPEINKEDI YRAGKCCVDS LAKLFEEGSS SSSSKKEKPL IESISREVEN INWLLEIMID
401: REIAEEFVEI WGKQRRLVEM HERVSPMVRY EVSRVTGAIF IAMGKRRVQC GGEARAGLVE AWFKPMLVDF GWLQRCKKGL DMREVEEGMG QTLLTLPVKE
501: QYQVFMEWFR WFSKHGTECP NLSKAFQIWW RRSFLRGVES STCR

Arabidopsis Description

PRL1-IFGBTB/POZ domain-containing protein At2g13690 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKH2]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.