Factsheet for GSMUA_Achr4P24950_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P03700_001	Banana	plastid	78.85	76.58
GSMUA_Achr5P10260_001	Banana	plastid	78.26	71.87
Os04t0579700-01	Rice	cytosol	71.15	67.54
HORVU0Hr1G005290.1	Barley	cytosol	59.09	63.08
KRH41224	Soybean	mitochondrion	62.45	58.74
KXG26972	Sorghum	plastid	70.36	58.65
Zm00001d026051_P002	Maize	cytosol, mitochondrion, plastid	70.16	58.58
TraesCS2B01G413600.1	Wheat	cytosol, plastid	69.76	57.59
CDY08328	Canola	cytosol, plastid	60.28	57.33
Bra027781.1-P	Field mustard	plastid	60.28	57.12
CDY38217	Canola	plastid	60.08	57.04
AT1G63850.1	Thale cress	cytosol	61.07	56.39
KRH59948	Soybean	cytosol, plastid	61.66	55.32
HORVU2Hr1G094080.1	Barley	cytosol	69.96	54.8
Solyc08g081380.2.1	Tomato	plastid	63.04	50.0
PGSC0003DMT400032124	Potato	plastid	63.44	50.0
PGSC0003DMT400012106	Potato	plastid	63.24	49.69
VIT_02s0025g00150.t01	Wine grape	plastid	63.04	47.83
GSMUA_Achr7P08160_001	Banana	cytosol	32.41	43.39
GSMUA_Achr9P28400_001	Banana	cytosol	39.72	39.26
GSMUA_Achr4P30630_001	Banana	cytosol	39.53	39.06
GSMUA_Achr2P17200_001	Banana	cytosol	33.6	33.53
GSMUA_Achr9P26390_001	Banana	cytosol, nucleus, peroxisome	33.4	32.13
GSMUA_Achr6P34610_001	Banana	cytosol	32.21	30.3
GSMUA_Achr7P03070_001	Banana	mitochondrion	29.84	28.93
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	28.85	28.24
GSMUA_Achr4P28120_001	Banana	cytosol	31.23	24.27
GSMUA_Achr6P24460_001	Banana	cytosol	7.11	22.93
GSMUA_Achr3P26130_001	Banana	mitochondrion	20.95	22.36

Protein Annotations

EnsemblPlants:GSMUA_Achr4P24950_001	EnsemblPlants:GSMUA_Achr4T24950_001	EnsemblPlantsGene:GSMUA_Achr4G24950_001	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:BTB/POZ_dom_prot	InterPro:IPR000210	PANTHER:PTHR31060	PANTHER:PTHR31060:SF3
PFscan:PS50097	SEG:seg	UniParc:UPI0002967547	UniProt:M0SRV6	MapMan:35.1	:

Description

H-BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G24950_001]

Coordinates

chr4:+:24607269..24608953

Molecular Weight (calculated)

56459.4 Da

IEP (calculated)

6.111

GRAVY (calculated)

-0.221

Length

506 amino acids

Sequence
(BLAST)

001: MDAFPAAAPA AFSSPYALCS SSYSKFNFAL GAGLLKPMSP PPLAALDKSR SSPTLFDMMT NEQGFYRRSP EHVDRVAEII GNCSPGNQLN DPESGDVHLT
101: LSSMDGLTVS LNVHRHILVG HSRFFAAKLR DLWSKQQRSL PYIVEISDCD DVEIYVETLC LMYCKDLRRR LMREDVSKVL GILKVSAAIA FDAGVLSCLE
201: YLEASPWAED EEEKVASLLS QLHLESLGTV EVLKRVSLEV APSAADEANS GCDSQEVLLR LLQVVLEGQD EKARREMKGL VSKLIRENST TTNGGGPGNG
301: VGSSEGRGGD LIEKSLYTAS DRCLRSLRHH FARAAASDLT DAAQIARQAD NLHWILDILI DRQSADDFLR TWACQTELSE LHPRVPAINR YEVSRVTARL
401: FIGVGKGQIL VPKEARCLLL RTWMESFYED FGWIRQRCNG LDRHLIEEGL ANTVLTLPLA TQQEVLLGWF HRFLNAGDDC PNIQKGFEMW WRRAFWRRNG
501: KLQTTG

Best Arabidopsis Sequence Match ( AT1G63850.1 )
(BLAST)

001: MDYSTATTTA GNGYSSPRDS SFPSSFTKFN SALTAGLLNP MSPPPPPAMH DKTRSSPTLF EMMASEADTI GKVPVQIHNG VLPSPSSSSS SSSAAATAAR
101: TTNVNHLVIS AQDKQALAMQ RISDLLVIRS PGNQFNDPNS SDVKLTLSSK DGISITMCVH RQILVAHSRF FAMKLSDRWS KQQLPPSSSP YIVEISDCDD
201: VEVYIETLML MYCRDLRKKM MRHDVSRVLG ILKVSAAIGF DAGVLSCLEY LEAAPWSEDE EYRIASLLSE LHLENVGATE VLRRVSVEAS NGNNGSNGGS
301: NDEVLLNLLH IVLEGKDEKA RRDMKTLVSK MLRENSSGND LRKESLYLAC DGCLHKLKRQ FLQAAESDLE NVDQIARQAD NLHWILDILI DRQIAEDFIV
401: MWASLSELSE VHSKVPVVHR FEISRVTARI FVGIGKGQIL TPKEVRCLLL RNWLTPFYDD FGWMRRASKG LDRYLIEDGL SNTILTLPLA WQQEFFLAWF
501: DRFLNSNEDC PNIQRGFEVW WRRAFWRRKE QSQEPARLRV TASATENS

Arabidopsis Description

BTB/POZ domain-containing protein At1g63850 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.