Factsheet for PGSC0003DMT400032124

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012106	Potato	plastid	98.44	98.14
Solyc08g081380.2.1	Tomato	plastid	97.04	97.65
KRH41224	Soybean	mitochondrion	64.02	76.39
KRH59948	Soybean	cytosol, plastid	62.93	71.63
VIT_02s0025g00150.t01	Wine grape	plastid	72.27	69.57
GSMUA_Achr1P03700_001	Banana	plastid	54.36	66.99
Os04t0579700-01	Rice	cytosol	55.3	66.6
AT1G63850.1	Thale cress	cytosol	55.61	65.15
CDY08328	Canola	cytosol, plastid	53.74	64.85
GSMUA_Achr5P10260_001	Banana	plastid	55.61	64.79
Bra027781.1-P	Field mustard	plastid	53.74	64.61
CDY38217	Canola	plastid	53.43	64.35
HORVU0Hr1G005290.1	Barley	cytosol	46.88	63.5
GSMUA_Achr4P24950_001	Banana	plastid	50.0	63.44
Zm00001d026051_P002	Maize	cytosol, mitochondrion, plastid	57.79	61.22
KXG26972	Sorghum	plastid	57.79	61.12
TraesCS2B01G413600.1	Wheat	cytosol, plastid	56.85	59.54
HORVU2Hr1G094080.1	Barley	cytosol	56.85	56.5
PGSC0003DMT400065249	Potato	plastid	35.98	46.57
PGSC0003DMT400026018	Potato	cytosol	31.62	37.87
PGSC0003DMT400073782	Potato	cytosol, plastid	23.52	27.76
PGSC0003DMT400001872	Potato	plastid	16.82	21.39

Protein Annotations

EnsemblPlants:PGSC0003DMT400032124	EnsemblPlantsGene:PGSC0003DMG400012330	EntrezGene:102588432	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:BTB/POZ_dom_prot	InterPro:IPR000210	PANTHER:PTHR31060	PANTHER:PTHR31060:SF3
PFscan:PS50097	PGSC:PGSC0003DMG400012330	RefSeq:XP_006343947.1	SEG:seg	UniParc:UPI00029620D9	UniProt:M1AWX1
MapMan:35.1	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012330]

Coordinates

chr8:+:55091112..55094801

Molecular Weight (calculated)

71640.4 Da

IEP (calculated)

7.756

GRAVY (calculated)

-0.390

Length

642 amino acids

Sequence
(BLAST)

001: MAATATTTTS TSTNLKFQIQ PIKPKRRRCR ETTISTTSNP SHYSPTNCST QCLNETRKVD TPTIVSPDNS WCCPASKSPS PSPSPSPPQP ISSCSSSISD
101: NTKIRYSPTT FPRVMESIGT LYGGGGGGGT PIPNNNTHEG FPSSFSKFNS ALTAGLLNPM SPPPSMDKTR SSPTLFEMMA NEPECITRST INTPISNGCS
201: NQKPASFVPL DKQALMQQRL LDLLACRSPG NQFNDSSSSD VKLTLSSKDG LSVAMNVHRQ ILVVHSRFFA VKLSEKWVKQ QRNSGPYIVE IADCDDIEVY
301: IETLRLMYCK DLRRRLMKED VSKVLGILKV SAAIGFDAGV LSCLEYLEAA PWAEDEEEKV ASLLSELRLE GVGAGEVLRR VSLDVTSGTE SGNGNEEVLL
401: KLLHVVLEGK DEKARREMKG LVSKMLHENS SHNDLRKESL YSACNACLQL LRHHFLRAAD ADMMDVGQIA RQADNLHWIL DILIDRQIAE DFLRTWASQS
501: ELSEAHSKVP ALYRYEVSRV TARLFVGIGK GQLLASKDAR CSLLQTWLVP FYEDFGWMRR ASRGLDRHLI EDGLSNTILT LPMALQQDIL MSWFDRFLNS
601: GDDCPNIQRG FEIWWRRSFW RRNGEPERPR QMRVMTATIE NS

Best Arabidopsis Sequence Match ( AT1G63850.1 )
(BLAST)

001: MDYSTATTTA GNGYSSPRDS SFPSSFTKFN SALTAGLLNP MSPPPPPAMH DKTRSSPTLF EMMASEADTI GKVPVQIHNG VLPSPSSSSS SSSAAATAAR
101: TTNVNHLVIS AQDKQALAMQ RISDLLVIRS PGNQFNDPNS SDVKLTLSSK DGISITMCVH RQILVAHSRF FAMKLSDRWS KQQLPPSSSP YIVEISDCDD
201: VEVYIETLML MYCRDLRKKM MRHDVSRVLG ILKVSAAIGF DAGVLSCLEY LEAAPWSEDE EYRIASLLSE LHLENVGATE VLRRVSVEAS NGNNGSNGGS
301: NDEVLLNLLH IVLEGKDEKA RRDMKTLVSK MLRENSSGND LRKESLYLAC DGCLHKLKRQ FLQAAESDLE NVDQIARQAD NLHWILDILI DRQIAEDFIV
401: MWASLSELSE VHSKVPVVHR FEISRVTARI FVGIGKGQIL TPKEVRCLLL RNWLTPFYDD FGWMRRASKG LDRYLIEDGL SNTILTLPLA WQQEFFLAWF
501: DRFLNSNEDC PNIQRGFEVW WRRAFWRRKE QSQEPARLRV TASATENS

Arabidopsis Description

BTB/POZ domain-containing protein At1g63850 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.