CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38217	Canola	plastid	98.31	98.12
AT1G63850.1	Thale cress	cytosol	91.35	88.69
KRH41224	Soybean	mitochondrion	67.67	66.91
Os04t0579700-01	Rice	cytosol	63.72	63.6
GSMUA_Achr1P03700_001	Banana	plastid	61.84	63.15
KRH59948	Soybean	cytosol, plastid	66.17	62.41
GSMUA_Achr5P10260_001	Banana	plastid	63.35	61.16
GSMUA_Achr4P24950_001	Banana	plastid	57.33	60.28
HORVU0Hr1G005290.1	Barley	cytosol	52.82	59.28
VIT_02s0025g00150.t01	Wine grape	plastid	70.68	56.37
Zm00001d026051_P002	Maize	cytosol, mitochondrion, plastid	63.53	55.78
TraesCS2B01G413600.1	Wheat	cytosol, plastid	63.91	55.46
KXG26972	Sorghum	plastid	63.16	55.35
Solyc08g081380.2.1	Tomato	plastid	65.04	54.23
PGSC0003DMT400032124	Potato	plastid	64.85	53.74
PGSC0003DMT400012106	Potato	plastid	65.04	53.73
HORVU2Hr1G094080.1	Barley	cytosol	64.1	52.79
CDY09229	Canola	plastid	39.47	42.25
CDX77940	Canola	mitochondrion	19.92	41.57
CDX73793	Canola	mitochondrion	6.2	40.74
CDX77942	Canola	mitochondrion	20.3	39.42
CDX77944	Canola	cytosol	33.83	35.16
CDX71164	Canola	cytosol	23.31	25.83

Protein Annotations

EnsemblPlants:CDY08328	EnsemblPlantsGene:GSBRNA2T00000022001	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:BTB/POZ_dom	InterPro:BTB/POZ_dom_prot	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	ncoils:Coil	PANTHER:PTHR31060
PANTHER:PTHR31060:SF3	PFscan:PS50097	ProteinID:CDY08328	ProteinID:CDY08328.1	SEG:seg	SUPFAM:SSF54695
UniParc:UPI0004EC01DF	UniProt:A0A078F976	MapMan:35.1	:	:	:

Description

BnaC09g12680DBnaC09g12680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F976]

Coordinates

chrLK031985:+:203693..205731

Molecular Weight (calculated)

60012.7 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.278

Length

532 amino acids

Sequence
(BLAST)

001: MDFSTTTTTT STAANGYSSP RDSSIPSSFT KFNSALTAGL LNPMSPPPPP PAMLDKSRAS PTLFEMMSSE AGSPVQIQNL ALPSSSRTTN ANRSHLVISA
101: QDKQALAMQR ISNLLMTRSP GNQFNDPASS DVKLTLSSKD GISITMCVHR QILVAHSRFF AVKLSDRWSK QQMAPSSSPY IVEISDCDDV EVYIETLMLM
201: YCRDLRKKMM RQDVSRVLGI LKVSAAIGFD AGVLSCLEYL EAAPWSEDEE HRIASLLSEL HLENVGATEV LRRVSVEASQ NNGSNDEVLL NLLHIVLEGK
301: DEKARRDMKT LVSKMLRENS SGNDLRKESL YLACDGCLHK LKRQFLQAAE SDLENVDQIA RQADNLHWIL DILIDRQIAE DFLVMWASLS ELSDVHGKVP
401: VVHRFEISRV TARIFVGIGK GQILTPKEVR CLLLRNWLTP FYDDFAWMKR ASKGLDRYLV EDGLSNTILT LPLAWQQEFF LAWFDRFLNS NDCPNIQRGF
501: EVWWRRAFWR RKEQSQEEPA RLRNIASATD NS

Best Arabidopsis Sequence Match ( AT1G63850.1 )
(BLAST)

001: MDYSTATTTA GNGYSSPRDS SFPSSFTKFN SALTAGLLNP MSPPPPPAMH DKTRSSPTLF EMMASEADTI GKVPVQIHNG VLPSPSSSSS SSSAAATAAR
101: TTNVNHLVIS AQDKQALAMQ RISDLLVIRS PGNQFNDPNS SDVKLTLSSK DGISITMCVH RQILVAHSRF FAMKLSDRWS KQQLPPSSSP YIVEISDCDD
201: VEVYIETLML MYCRDLRKKM MRHDVSRVLG ILKVSAAIGF DAGVLSCLEY LEAAPWSEDE EYRIASLLSE LHLENVGATE VLRRVSVEAS NGNNGSNGGS
301: NDEVLLNLLH IVLEGKDEKA RRDMKTLVSK MLRENSSGND LRKESLYLAC DGCLHKLKRQ FLQAAESDLE NVDQIARQAD NLHWILDILI DRQIAEDFIV
401: MWASLSELSE VHSKVPVVHR FEISRVTARI FVGIGKGQIL TPKEVRCLLL RNWLTPFYDD FGWMRRASKG LDRYLIEDGL SNTILTLPLA WQQEFFLAWF
501: DRFLNSNEDC PNIQRGFEVW WRRAFWRRKE QSQEPARLRV TASATENS

Arabidopsis Description

BTB/POZ domain-containing protein At1g63850 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.