Factsheet for PGSC0003DMT400065249

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072720.1.1	Tomato	plastid	98.19	97.79
Solyc11g072900.1.1	Tomato	cytosol	48.19	89.85
VIT_06s0004g03710.t01	Wine grape	plastid	67.74	69.28
KRG88696	Soybean	plastid	61.9	62.15
KRH24978	Soybean	plastid	60.89	60.04
CDY09229	Canola	plastid	58.67	58.55
Bra020266.1-P	Field mustard	plastid	58.27	58.38
AT5G60050.1	Thale cress	cytosol, plastid	57.46	57.11
GSMUA_Achr4P30630_001	Banana	cytosol	55.65	53.91
GSMUA_Achr9P28400_001	Banana	cytosol	54.23	52.54
PGSC0003DMT400032124	Potato	plastid	46.57	35.98
PGSC0003DMT400012106	Potato	plastid	45.56	35.09
PGSC0003DMT400026018	Potato	cytosol	36.69	33.96
PGSC0003DMT400073782	Potato	cytosol, plastid	27.22	24.82
PGSC0003DMT400001872	Potato	plastid	20.97	20.59

Protein Annotations

EnsemblPlants:PGSC0003DMT400065249	EnsemblPlantsGene:PGSC0003DMG400025360	EntrezGene:102603605	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:BTB/POZ_dom_prot	InterPro:IPR000210	PANTHER:PTHR31060	PANTHER:PTHR31060:SF12
PFscan:PS50097	PGSC:PGSC0003DMG400025360	RefSeq:XP_006365150.1	SEG:seg	UniParc:UPI0002968345	UniProt:M1CDM4
MapMan:35.1	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025360]

Coordinates

chr11:+:44827133..44829892

Molecular Weight (calculated)

56604.8 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.370

Length

496 amino acids

Sequence
(BLAST)

001: MASPNNNKSK NQLVSTMIKQ GFISNPYLSP SPSPPRTSNP PSPIQIPTRP SNPSPTLFEM MSEEQTRESK HSLESRYRTQ ERVSRVLAEA PFPAVGDVRL
101: TIAARDGFKV SMDVHRRVLV GRSRFFADKL QRNGSHSVEI LDCDDVEVYV ETLVLMYCDD LKKRLMGENV NKVLGLLKIS SAIMFDDGVL ACLEYLEAVP
201: WSQQEEEQVV SHLSQLQLPD SAADILQRLV AEPSTSSRSD DILQRILTGV LHAKDDKARK EMKKVISRLL RENTSNSSSH ESNLDISRDA LYHFCHRCLT
301: SLILSLSEAT SVDDNRQQDR GVLMGEIARE ADNLQWLVDI LIDRKMGDEF VKLWAEQKEL SILHSKIPTM YRHEISKITA QLCIAIGRGN LLVPKDVRYC
401: LLSTWLESLY DDFGWMKRAG RSIDKKLVEE GLGQTILTLP LAQQQTILLN WFDRFLNKGD DCPNIQRAFE VWWRRSFVKQ YTVDSQLQLA IFDYTE

Best Arabidopsis Sequence Match ( AT5G60050.1 )
(BLAST)

001: MASREVSTMI KQGFIADPSL SFSPSRISSP IKLSTASPPL PPPPPPPPNE STLSNPTLFD MMSDEHNREL PRRKSHARVA QILTEFKNGV VYGHSLGPGD
101: VKLTVVGKDG YRVTMDVHRK VLSEKSRFFM EKMNSRREKG VSHMVEISEC DDLEIYVETV VLMYSDDLKK KLIGENVIKI LALLKVSAAI SFDEGVMSCL
201: EHLEAVPWSE DEEETVVTCL EELHLPDDSV TLILQRVSSQ PSTSSTRTRT DDIFSKLLTG VLQAKDDKAR REMKVLIFKL VREEADYDVS RDTLYGLCHR
301: CLTSLVLCLS EVTTQMNDPG KDRGALMGEI AREADNMLWM VDILIEKKLC SEFVKLWADQ KELANLHSKI PTMYRHEISK ITAQICVGIG KGRILVNRET
401: RFAVLNTWLE ALYDDFGWMR RLSSRSLDRK LVEDGLSQTI LTLSLRQQQV ILMKWFDRFL SKGDDCPNVQ RAFEVWWRRA FIRQVLTEPD EPRLQITLY

Arabidopsis Description

BTB/POZ domain-containing protein At5g60050 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVG9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.