Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020266.1-P | Field mustard | plastid | 87.58 | 88.28 |
| CDY09229 | Canola | plastid | 87.37 | 87.73 |
| VIT_06s0004g03710.t01 | Wine grape | plastid | 63.33 | 65.15 |
| KRG88696 | Soybean | plastid | 58.72 | 59.31 |
| KRH24978 | Soybean | plastid | 59.12 | 58.65 |
| Solyc11g072900.1.1 | Tomato | cytosol | 31.06 | 58.27 |
| Solyc11g072720.1.1 | Tomato | plastid | 58.12 | 58.23 |
| PGSC0003DMT400065249 | Potato | plastid | 57.11 | 57.46 |
| GSMUA_Achr4P30630_001 | Banana | cytosol | 51.9 | 50.59 |
| GSMUA_Achr9P28400_001 | Banana | cytosol | 51.5 | 50.2 |
| AT1G63850.1 | Thale cress | cytosol | 42.28 | 38.5 |
| AT3G50780.1 | Thale cress | cytosol | 34.47 | 33.08 |
| AT2G13690.1 | Thale cress | cytosol, plastid | 26.65 | 24.45 |
Protein Annotations
| MapMan:35.1 | EntrezGene:836127 | UniProt:A0A178UPF1 | ProteinID:AED97271.1 | EMBL:AK117505 | ArrayExpress:AT5G60050 |
| EnsemblPlantsGene:AT5G60050 | RefSeq:AT5G60050 | TAIR:AT5G60050 | RefSeq:AT5G60050-TAIR-G | EnsemblPlants:AT5G60050.1 | TAIR:AT5G60050.1 |
| Unigene:At.68517 | ProteinID:BAA96934.1 | EMBL:BT006037 | InterPro:BTB/POZ_dom | InterPro:BTB/POZ_dom_prot | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0019538 | InterPro:IPR000210 | RefSeq:NP_200813.1 | ProteinID:OAO95004.1 | PO:PO:0000293 |
| PFscan:PS50097 | PANTHER:PTHR31060 | PANTHER:PTHR31060:SF12 | UniProt:Q9LVG9 | UniParc:UPI00000AC22B | SEG:seg |
Description
BTB/POZ domain-containing protein At5g60050 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVG9]
Coordinates
chr5:-:24183567..24185629
Molecular Weight (calculated)
56942.0 Da
IEP (calculated)
6.521
GRAVY (calculated)
-0.271
Length
499 amino acids
Sequence
(BLAST)
(BLAST)
001: MASREVSTMI KQGFIADPSL SFSPSRISSP IKLSTASPPL PPPPPPPPNE STLSNPTLFD MMSDEHNREL PRRKSHARVA QILTEFKNGV VYGHSLGPGD
101: VKLTVVGKDG YRVTMDVHRK VLSEKSRFFM EKMNSRREKG VSHMVEISEC DDLEIYVETV VLMYSDDLKK KLIGENVIKI LALLKVSAAI SFDEGVMSCL
201: EHLEAVPWSE DEEETVVTCL EELHLPDDSV TLILQRVSSQ PSTSSTRTRT DDIFSKLLTG VLQAKDDKAR REMKVLIFKL VREEADYDVS RDTLYGLCHR
301: CLTSLVLCLS EVTTQMNDPG KDRGALMGEI AREADNMLWM VDILIEKKLC SEFVKLWADQ KELANLHSKI PTMYRHEISK ITAQICVGIG KGRILVNRET
401: RFAVLNTWLE ALYDDFGWMR RLSSRSLDRK LVEDGLSQTI LTLSLRQQQV ILMKWFDRFL SKGDDCPNVQ RAFEVWWRRA FIRQVLTEPD EPRLQITLY
101: VKLTVVGKDG YRVTMDVHRK VLSEKSRFFM EKMNSRREKG VSHMVEISEC DDLEIYVETV VLMYSDDLKK KLIGENVIKI LALLKVSAAI SFDEGVMSCL
201: EHLEAVPWSE DEEETVVTCL EELHLPDDSV TLILQRVSSQ PSTSSTRTRT DDIFSKLLTG VLQAKDDKAR REMKVLIFKL VREEADYDVS RDTLYGLCHR
301: CLTSLVLCLS EVTTQMNDPG KDRGALMGEI AREADNMLWM VDILIEKKLC SEFVKLWADQ KELANLHSKI PTMYRHEISK ITAQICVGIG KGRILVNRET
401: RFAVLNTWLE ALYDDFGWMR RLSSRSLDRK LVEDGLSQTI LTLSLRQQQV ILMKWFDRFL SKGDDCPNVQ RAFEVWWRRA FIRQVLTEPD EPRLQITLY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.