Factsheet for HORVU5Hr1G122340.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G019400.1
HORVU3Hr1G083310.1
HORVU4Hr1G032970.1
HORVU5Hr1G016360.5
HORVU5Hr1G098300.1
HORVU7Hr1G085970.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54900.1	HORVU5Hr1G016360.5	AT3G50780.1	21798944
AT3G54900.1	HORVU5Hr1G098300.1	AT3G50780.1	21798944
AT3G54900.1	HORVU0Hr1G019400.1	AT5G09830.1	21798944
AT3G54900.1	HORVU3Hr1G083310.1	AT5G09830.1	21798944
AT3G54900.1	HORVU4Hr1G032970.1	AT5G09830.1	21798944
AT3G54900.1	HORVU7Hr1G085970.1	AT5G09830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G542400.1	Wheat	plastid	77.44	92.64
TraesCS4A01G330300.1	Wheat	plastid	77.44	92.64
TraesCS5B01G545100.1	Wheat	plastid	76.92	90.91
KRH40339	Soybean	cytosol	6.67	76.47
Os03t0851200-01	Rice	nucleus, plastid	65.13	75.6
CDX73434	Canola	cytosol	29.74	74.36
EER93091	Sorghum	plastid	63.59	72.09
Zm00001d034857_P001	Maize	plastid	63.08	71.51
Zm00001d012845_P001	Maize	plastid	63.08	71.51
GSMUA_Achr6P15060_001	Banana	plastid	49.74	55.75
Solyc02g082200.2.1	Tomato	plastid	47.69	52.84
PGSC0003DMT400035470	Potato	plastid	47.18	51.98
CDX78278	Canola	plastid	44.62	50.29
AT3G54900.1	Thale cress	plastid	44.62	50.29
Bra007110.1-P	Field mustard	plastid	43.59	48.85
KRH00894	Soybean	plastid	44.1	48.59
CDX67614	Canola	plastid	44.1	47.51
Bra003199.1-P	Field mustard	plastid	44.1	47.51
CDY07516	Canola	plastid	43.59	46.96
KRH40338	Soybean	plastid	37.44	45.91
HORVU5Hr1G048120.8	Barley	cytosol, plastid	30.26	18.5
HORVU3Hr1G023970.2	Barley	cytosol	23.59	17.76

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	UniProt:A0A287SZX5	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0015035	GO:GO:0015297	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	EnsemblPlantsGene:HORVU5Hr1G122340
EnsemblPlants:HORVU5Hr1G122340.1	InterPro:IPR002109	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293
PANTHER:PTHR10293:SF37	SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI000B47A157	SEG:seg

Description

No Description!

Coordinates

chrchr5H:-:661973529..661978213

Molecular Weight (calculated)

20965.6 Da

IEP (calculated)

9.614

GRAVY (calculated)

-0.079

Length

195 amino acids

Sequence
(BLAST)

001: MTVLPSSQPQ PRLIRPLHPS PPARDLHKPP AAMAAATALA GASLPLPLSA RPRPVRFSVA LPRTAPPPPA LRLRSVRRLA ATEGGGGGVA AGMKETLDKV
101: VTAHKVVLFM KGTKDFPQCG FSHTVVQILR SLDVPFETLD VLANDALRQG LKEYSSWPTF PQLYIDGEFF GGCDITLEAY KSGELQETLE KAMCS

Best Arabidopsis Sequence Match ( AT3G54900.1 )
(BLAST)

001: MALRSVKTPT LITSVAVVSS SVTNKPHSIR FSLKPTSALV VHNHQLSFYG SNLKLKPTKF RCSASALTPQ LKDTLEKLVN SEKVVLFMKG TRDFPMCGFS
101: NTVVQILKNL NVPFEDVNIL ENEMLRQGLK EYSNWPTFPQ LYIGGEFFGG CDITLEAFKT GELQEEVEKA MCS

Arabidopsis Description

GRXS14Monothiol glutaredoxin-S14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84Y95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.