CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08332
KRH08334
KRH28572
KRH43388
KRH59529
KRH69973
KRH69974
KRH76896

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54900.1	KRH08332	AT3G50780.1	21798944
AT3G54900.1	KRH08334	AT3G50780.1	21798944
AT3G54900.1	KRH28572	AT3G50780.1	21798944
AT3G54900.1	KRH69973	AT3G50780.1	21798944
AT3G54900.1	KRH69974	AT3G50780.1	21798944
AT3G54900.1	KRH76896	AT3G50780.1	21798944
AT3G54900.1	KRH43388	AT5G09830.1	21798944
AT3G54900.1	KRH59529	AT5G09830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40339	Soybean	cytosol	9.6	100.0
KRH40338	Soybean	plastid	85.88	95.6
CDX73434	Canola	cytosol	33.33	75.64
Solyc02g082200.2.1	Tomato	plastid	58.19	58.52
CDX78278	Canola	plastid	56.5	57.8
PGSC0003DMT400035470	Potato	plastid	57.63	57.63
Bra007110.1-P	Field mustard	plastid	56.5	57.47
AT3G54900.1	Thale cress	plastid	55.93	57.23
Os03t0851200-01	Rice	nucleus, plastid	53.11	55.95
Zm00001d034857_P001	Maize	plastid	53.67	55.23
EER93091	Sorghum	plastid	53.67	55.23
CDY07516	Canola	plastid	55.37	54.14
CDX67614	Canola	plastid	55.37	54.14
Zm00001d012845_P001	Maize	plastid	52.54	54.07
GSMUA_Achr6P15060_001	Banana	plastid	53.11	54.02
Bra003199.1-P	Field mustard	plastid	54.8	53.59
TraesCS5D01G542400.1	Wheat	plastid	49.15	53.37
TraesCS5B01G545100.1	Wheat	plastid	49.15	52.73
TraesCS4A01G330300.1	Wheat	plastid	48.02	52.15
KRH09770	Soybean	cytosol	14.12	47.17
HORVU5Hr1G122340.1	Barley	plastid	48.59	44.1
KRH44417	Soybean	cytosol, plastid	29.38	32.3
KRH47491	Soybean	cytosol, plastid	29.38	32.3
KRH23549	Soybean	mitochondrion	27.68	30.25
KRH65709	Soybean	nucleus, plastid	36.72	22.03
KRH75953	Soybean	nucleus	35.59	19.69
KRH20463	Soybean	nucleus	29.38	10.61

Protein Annotations

EntrezGene:100500060	Gene3D:3.40.30.10	MapMan:35.1	EMBL:ACUP02011481	EMBL:BT090726	UniProt:C6SZX3
EnsemblPlantsGene:GLYMA_18G240400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0015036	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0046872	GO:GO:0051536
GO:GO:0051537	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109	EnsemblPlants:KRH00894
ProteinID:KRH00894	ProteinID:KRH00894.1	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293
PANTHER:PTHR10293:SF37	SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI0001890D10	:

Description

hypothetical protein

Coordinates

chr18:-:52914082..52916967

Molecular Weight (calculated)

19677.8 Da

IEP (calculated)

8.486

GRAVY (calculated)

-0.016

Length

177 amino acids

Sequence
(BLAST)

001: MSWCYCAKPM TLQLPLQSRA ASSFHSHVGG VTVTFSTLSL RPSSPLVLTH NLHFQPKLKR ASTTIRCSSA LTPQLKSTLD QVIASNKVVV FMKGTKDFPQ
101: CGFSNTVVQI LKSLNVPFET INVLENDLLR QGLKEYSSWP TFPQVYIEGE FFGGCDITVD AYQKGELQEL LEKAMLS

Best Arabidopsis Sequence Match ( AT3G54900.1 )
(BLAST)

001: MALRSVKTPT LITSVAVVSS SVTNKPHSIR FSLKPTSALV VHNHQLSFYG SNLKLKPTKF RCSASALTPQ LKDTLEKLVN SEKVVLFMKG TRDFPMCGFS
101: NTVVQILKNL NVPFEDVNIL ENEMLRQGLK EYSNWPTFPQ LYIGGEFFGG CDITLEAFKT GELQEEVEKA MCS

Arabidopsis Description

GRXS14Monothiol glutaredoxin-S14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84Y95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.