Factsheet for Solyc02g082200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g089950.1.1
Solyc11g005360.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54900.1	Solyc02g089950.1.1	AT3G50780.1	21798944
AT3G54900.1	Solyc11g005360.1.1	AT5G09830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035470	Potato	plastid	96.02	95.48
CDX73434	Canola	cytosol	34.66	78.21
KRH40339	Soybean	cytosol	6.25	64.71
KRH00894	Soybean	plastid	58.52	58.19
Os03t0851200-01	Rice	nucleus, plastid	54.55	57.14
Zm00001d034857_P001	Maize	plastid	55.68	56.98
Zm00001d012845_P001	Maize	plastid	55.68	56.98
EER93091	Sorghum	plastid	55.11	56.4
KRH40338	Soybean	plastid	50.57	55.97
TraesCS5D01G542400.1	Wheat	plastid	51.7	55.83
TraesCS4A01G330300.1	Wheat	plastid	51.14	55.21
GSMUA_Achr6P15060_001	Banana	plastid	54.55	55.17
TraesCS5B01G545100.1	Wheat	plastid	51.14	54.55
AT3G54900.1	Thale cress	plastid	53.41	54.34
CDX78278	Canola	plastid	52.84	53.76
Bra007110.1-P	Field mustard	plastid	52.84	53.45
CDY07516	Canola	plastid	53.98	52.49
CDX67614	Canola	plastid	53.98	52.49
Bra003199.1-P	Field mustard	plastid	53.98	52.49
HORVU5Hr1G122340.1	Barley	plastid	52.84	47.69
Solyc06g067960.2.1	Tomato	plastid	27.84	28.82
Solyc09g005620.2.1	Tomato	plastid	34.66	20.89
Solyc02g078360.2.1	Tomato	cytosol	5.68	3.38

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin
InterPro:IPR002109	UniProt:K4BA90	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293
PANTHER:PTHR10293:SF37	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc02g082200.2	EnsemblPlants:Solyc02g082200.2.1	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf
UniParc:UPI0002767D26	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:45896621..45900895

Molecular Weight (calculated)

19382.3 Da

IEP (calculated)

8.320

GRAVY (calculated)

-0.056

Length

176 amino acids

Sequence
(BLAST)

001: MSLGISLQWQ LPSVIRSTTT SAAQRTTDVF LSFPTVHSGR ALQSSAIPSS SIATGKRDGR LRSLRCLSAL DPNLKSTLDK VVTSQKIVLF MKGTKEFPQC
101: GFSNTVVQIL KALNAPFETL NILENEALRQ GLKEYSSWPT FPQLYIDGEF FGGCDIVVEA YKSGELQELL ERTLCS

Best Arabidopsis Sequence Match ( AT3G54900.1 )
(BLAST)

001: MALRSVKTPT LITSVAVVSS SVTNKPHSIR FSLKPTSALV VHNHQLSFYG SNLKLKPTKF RCSASALTPQ LKDTLEKLVN SEKVVLFMKG TRDFPMCGFS
101: NTVVQILKNL NVPFEDVNIL ENEMLRQGLK EYSNWPTFPQ LYIGGEFFGG CDITLEAFKT GELQEEVEKA MCS

Arabidopsis Description

GRXS14Monothiol glutaredoxin-S14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84Y95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.