Factsheet for GSMUA_Achr6P15060_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P17200_001
GSMUA_Achr4P28120_001
GSMUA_Achr6P19570_001
GSMUA_Achr6P34610_001
GSMUA_Achr7P08160_001
GSMUA_Achr9P26390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54900.1	GSMUA_Achr2P17200_001	AT3G50780.1	21798944
AT3G54900.1	GSMUA_Achr4P28120_001	AT3G50780.1	21798944
AT3G54900.1	GSMUA_Achr6P34610_001	AT3G50780.1	21798944
AT3G54900.1	GSMUA_Achr7P08160_001	AT3G50780.1	21798944
AT3G54900.1	GSMUA_Achr9P26390_001	AT3G50780.1	21798944
AT3G54900.1	GSMUA_Achr6P19570_001	AT5G09830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73434	Canola	cytosol	35.06	78.21
KRH40339	Soybean	cytosol	6.32	64.71
Os03t0851200-01	Rice	nucleus, plastid	59.2	61.31
TraesCS5D01G542400.1	Wheat	plastid	56.32	60.12
TraesCS4A01G330300.1	Wheat	plastid	55.75	59.51
TraesCS5B01G545100.1	Wheat	plastid	55.17	58.18
Zm00001d034857_P001	Maize	plastid	57.47	58.14
EER93091	Sorghum	plastid	57.47	58.14
Zm00001d012845_P001	Maize	plastid	56.9	57.56
CDX78278	Canola	plastid	55.17	55.49
Bra007110.1-P	Field mustard	plastid	54.6	54.6
Solyc02g082200.2.1	Tomato	plastid	55.17	54.55
AT3G54900.1	Thale cress	plastid	53.45	53.76
PGSC0003DMT400035470	Potato	plastid	54.6	53.67
KRH00894	Soybean	plastid	54.02	53.11
KRH40338	Soybean	plastid	47.7	52.2
Bra003199.1-P	Field mustard	plastid	52.3	50.28
CDX67614	Canola	plastid	52.3	50.28
HORVU5Hr1G122340.1	Barley	plastid	55.75	49.74
CDY07516	Canola	plastid	51.72	49.72
GSMUA_Achr10P...	Banana	mitochondrion	22.99	20.83
GSMUA_Achr7P08380_001	Banana	plastid	25.86	16.54
GSMUA_Achr5P14210_001	Banana	plastid	29.31	15.69
GSMUA_Achr8P11270_001	Banana	cytosol	28.74	11.39
GSMUA_Achr2P10580_001	Banana	cytosol	30.46	11.0

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006810	GO:GO:0006812
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009941	GO:GO:0009987	GO:GO:0015035	GO:GO:0015297	GO:GO:0019725	GO:GO:0022900
GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like	EnsemblPlantsGene:GSMUA_Achr6G15060_001	EnsemblPlants:GSMUA_Achr6P15060_001	EnsemblPlants:GSMUA_Achr6T15060_001
InterPro:Glutaredoxin	InterPro:IPR002109	UniProt:M0T754	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354
PANTHER:PTHR10293	PANTHER:PTHR10293:SF37	SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI000295696D

Description

Whole genome shotgun sequence of line PN40024, scaffold_68.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G15060_001]

Coordinates

chr6:-:10006452..10011921

Molecular Weight (calculated)

19268.4 Da

IEP (calculated)

9.877

GRAVY (calculated)

-0.120

Length

174 amino acids

Sequence
(BLAST)

001: MASLAPLSSW TAIGVTRALA AVRRVQPPAN SFLAGPRRRN VATLVSQPLR FRSKSPGTSL SARCFSALSP EMKSTIDKVV QSHKVVLFMK GTKDFPQCGF
101: SNTVVQILKS LNVPFETLNI LENDMLRQGM KEYSSWPTFP QLYIDGEFFG GCDITIEAYK NGQLQEQIEK AMCS

Best Arabidopsis Sequence Match ( AT3G54900.1 )
(BLAST)

001: MALRSVKTPT LITSVAVVSS SVTNKPHSIR FSLKPTSALV VHNHQLSFYG SNLKLKPTKF RCSASALTPQ LKDTLEKLVN SEKVVLFMKG TRDFPMCGFS
101: NTVVQILKNL NVPFEDVNIL ENEMLRQGLK EYSNWPTFPQ LYIGGEFFGG CDITLEAFKT GELQEEVEKA MCS

Arabidopsis Description

GRXS14Monothiol glutaredoxin-S14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84Y95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.