Factsheet for Solyc09g005620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38270.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT2G38270.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT2G38270.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT2G38270.1	Solyc06g072990.1.1	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011370	Potato	plastid	96.58	95.27
EES16486	Sorghum	cytosol	38.36	76.19
VIT_08s0105g00490.t01	Wine grape	plastid	71.23	70.03
KRH65709	Soybean	nucleus, plastid	67.81	67.12
CDY14473	Canola	plastid	63.7	64.58
AT2G38270.1	Thale cress	plastid	64.04	63.82
CDY07744	Canola	plastid	63.7	63.7
Bra000047.1-P	Field mustard	plastid	64.04	63.61
Os12t0175500-01	Rice	plastid	60.96	62.46
KRH75953	Soybean	nucleus	67.81	61.88
EES09081	Sorghum	plastid	59.25	60.28
TraesCS5B01G152900.1	Wheat	plastid	59.59	60.21
TraesCS5D01G159600.1	Wheat	plastid	59.59	60.21
Zm00001d005094_P001	Maize	plastid	57.88	58.08
Zm00001d044606_P001	Maize	plastid	57.88	57.88
HORVU5Hr1G048120.8	Barley	cytosol, plastid	60.27	55.17
GSMUA_Achr5P14210_001	Banana	plastid	60.96	54.77
TraesCS5A01G154700.1	Wheat	mitochondrion	59.25	44.47
Solyc02g082200.2.1	Tomato	plastid	20.89	34.66
Solyc06g067960.2.1	Tomato	plastid	17.12	29.41
Solyc02g078360.2.1	Tomato	cytosol	8.56	8.45

Protein Annotations

Gene3D:3.40.1440.10	Gene3D:3.40.30.10	MapMan:35.1	InterPro:GIY-YIG_endonuc_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114
InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109	InterPro:IPR035901	UniProt:K4CQ52	InterPro:Monothiol_GRX-rel
PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF45	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc09g005620.2
EnsemblPlants:Solyc09g005620.2.1	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI000276B128	:	:

Description

No Description!

Coordinates

chr9:-:426125..428965

Molecular Weight (calculated)

32249.2 Da

IEP (calculated)

7.501

GRAVY (calculated)

-0.320

Length

292 amino acids

Sequence
(BLAST)

001: MATFNISFLT QPAIFSSQNT PSFSSYSLPK TSFRFPSITL RPKTRTTTRH HASIVVAALK KLSETDPLTV PLQSDEIAGS FPKESGVYAV YDTNGDLQFV
101: GISRNIAASV ISHKNSVPQL CSSVKVGVVE EPDRTALTES WKSWMEEHIT TNGKVPPGNE PGNSTWVRQP PKKKADLRLT PGRNVQLTVP LEDLIDRLVK
201: ENKVVAFIKG SRSAPQCGFS QRVVSILESE GVDYESIDVL DEEYNSGLRE TLKNYSNWPT FPQIFVKGEL VGGCDILTSM YEKGELASLF KS

Best Arabidopsis Sequence Match ( AT2G38270.1 )
(BLAST)

001: MAAITISSSL HASASPRVVR PHVSRNTPVI TLYSRFTPSF SFPSLSFTLR DTAPSRRRSF FIASAVKSLT ETELLPITEA DSIPSASGVY AVYDKSDELQ
101: FVGISRNIAA SVSAHLKSVP ELCGSVKVGI VEEPDKAVLT QAWKLWIEEH IKVTGKVPPG NKSGNNTFVK QTPRKKSDIR LTPGRHVELT VPLEELIDRL
201: VKESKVVAFI KGSRSAPQCG FSQRVVGILE SQGVDYETVD VLDDEYNHGL RETLKNYSNW PTFPQIFVKG ELVGGCDILT SMYENGELAN ILN

Arabidopsis Description

GRXS16Bifunctional monothiol glutaredoxin-S16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H7F6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.