CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09081	Sorghum	plastid	99.32	50.87
Os12t0175500-01	Rice	plastid	91.84	47.37
Zm00001d044606_P001	Maize	plastid	92.52	46.58
TraesCS5D01G159600.1	Wheat	plastid	91.16	46.37
TraesCS5B01G152900.1	Wheat	plastid	91.16	46.37
Zm00001d005094_P001	Maize	plastid	91.16	46.05
HORVU5Hr1G048120.8	Barley	cytosol, plastid	91.16	42.01
VIT_08s0105g00490.t01	Wine grape	plastid	78.91	39.06
Solyc09g005620.2.1	Tomato	plastid	76.19	38.36
PGSC0003DMT400011370	Potato	plastid	76.87	38.18
CDY14473	Canola	plastid	73.47	37.5
AT2G38270.1	Thale cress	plastid	74.15	37.2
CDY07744	Canola	plastid	73.47	36.99
Bra000047.1-P	Field mustard	plastid	73.47	36.73
KRH65709	Soybean	nucleus, plastid	73.47	36.61
GSMUA_Achr5P14210_001	Banana	plastid	80.27	36.31
TraesCS5A01G154700.1	Wheat	mitochondrion	91.16	34.45
KRH75953	Soybean	nucleus	74.15	34.06
EER93091	Sorghum	plastid	34.01	29.07
KXG31737	Sorghum	mitochondrion	33.33	26.49
EES12336	Sorghum	mitochondrion	32.65	25.26
KXG38234	Sorghum	cytosol	34.01	10.02

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	EntrezGene:8064762	UniProt:C5YQ13	EnsemblPlants:EES16486	ProteinID:EES16486
ProteinID:EES16486.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0015036	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0046872	GO:GO:0051536
GO:GO:0051537	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109	InterPro:Monothiol_GRX
InterPro:Monothiol_GRX-rel	PFAM:PF00462	PIRSF:PIRSF005894	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF45
EnsemblPlantsGene:SORBI_3008G003400	SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI0001A8834B	RefSeq:XP_002442648.1

Description

hypothetical protein

Coordinates

chr8:-:293128..294251

Molecular Weight (calculated)

16057.2 Da

IEP (calculated)

6.347

GRAVY (calculated)

-0.212

Length

147 amino acids

Sequence
(BLAST)

001: MQEHIEATGK APPGNVAGNY TWVGAPQRPP DLRLTPGRHV QLTVPLEQLI DRLVKENKVV AFIKGSRSAP QCGFSQRVVG ILEAHGADFV TVDVLDEEHN
101: HGLRETLKTY SNWPTFPQIF IGGELVGGCD IISSMAEKGE LAALFQK

Best Arabidopsis Sequence Match ( AT2G38270.1 )
(BLAST)

001: MAAITISSSL HASASPRVVR PHVSRNTPVI TLYSRFTPSF SFPSLSFTLR DTAPSRRRSF FIASAVKSLT ETELLPITEA DSIPSASGVY AVYDKSDELQ
101: FVGISRNIAA SVSAHLKSVP ELCGSVKVGI VEEPDKAVLT QAWKLWIEEH IKVTGKVPPG NKSGNNTFVK QTPRKKSDIR LTPGRHVELT VPLEELIDRL
201: VKESKVVAFI KGSRSAPQCG FSQRVVGILE SQGVDYETVD VLDDEYNHGL RETLKNYSNW PTFPQIFVKG ELVGGCDILT SMYENGELAN ILN

Arabidopsis Description

GRXS16Bifunctional monothiol glutaredoxin-S16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H7F6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.