CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85227
CDX86405
CDX86406
CDY04044
CDY08148
CDY11652
CDY44428
CDY56082
CDY68857

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38270.1	CDY11652	AT1G69810.1	21798944
AT2G38270.1	CDY56082	AT1G69810.1	21798944
AT2G38270.1	CDY68857	AT1G69810.1	21798944
AT2G38270.1	CDX85227	AT3G28910.1	21798944
AT2G38270.1	CDX86405	AT3G28910.1	21798944
AT2G38270.1	CDX86406	AT3G28910.1	21798944
AT2G38270.1	CDY04044	AT3G28910.1	21798944
AT2G38270.1	CDY44428	AT3G28910.1	21798944
AT2G38270.1	CDY08148	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14473	Canola	plastid	97.26	98.61
Bra000047.1-P	Field mustard	plastid	98.29	97.62
AT2G38270.1	Thale cress	plastid	87.33	87.03
EES16486	Sorghum	cytosol	36.99	73.47
VIT_08s0105g00490.t01	Wine grape	plastid	65.07	63.97
Solyc09g005620.2.1	Tomato	plastid	63.7	63.7
PGSC0003DMT400011370	Potato	plastid	63.36	62.5
Os12t0175500-01	Rice	plastid	59.93	61.4
KRH65709	Soybean	nucleus, plastid	60.27	59.66
EES09081	Sorghum	plastid	56.16	57.14
TraesCS5D01G159600.1	Wheat	plastid	56.16	56.75
TraesCS5B01G152900.1	Wheat	plastid	56.16	56.75
Zm00001d005094_P001	Maize	plastid	55.82	56.01
Zm00001d044606_P001	Maize	plastid	55.48	55.48
KRH75953	Soybean	nucleus	59.93	54.69
HORVU5Hr1G048120.8	Barley	cytosol, plastid	56.85	52.04
GSMUA_Achr5P14210_001	Banana	plastid	55.14	49.54
CDX73434	Canola	cytosol	11.3	42.31
TraesCS5A01G154700.1	Wheat	mitochondrion	55.82	41.9
CDX78278	Canola	plastid	20.21	34.1
CDX67614	Canola	plastid	20.55	33.15
CDY07516	Canola	plastid	20.21	32.6
CDY20141	Canola	mitochondrion	17.81	31.14
CDY21857	Canola	mitochondrion	17.81	31.14
CDX97692	Canola	mitochondrion	18.15	30.99
CDY30094	Canola	mitochondrion	16.78	29.7
CDY16635	Canola	cytosol	17.81	16.94
CDY67888	Canola	cytosol	18.84	15.62
CDX90882	Canola	cytosol	22.26	13.63
CDY21322	Canola	cytosol	22.95	13.19

Protein Annotations

Gene3D:3.40.1440.10	Gene3D:3.40.30.10	MapMan:35.1	GO:A0A078F3X2	UniProt:A0A078F3X2	EnsemblPlants:CDY07744
ProteinID:CDY07744	ProteinID:CDY07744.1	InterPro:GIY-YIG_endonuc_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like
EnsemblPlantsGene:GSBRNA2T00124870001	InterPro:Glutaredoxin	InterPro:IPR002109	InterPro:IPR035901	InterPro:Monothiol_GRX-rel	PFAM:PF00462
PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF45	SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf
UniParc:UPI0004EE7337	SEG:seg	:	:	:	:

Description

BnaA03g17670DBnaA03g17670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F3X2]

Coordinates

chrLK031980:+:731015..732454

Molecular Weight (calculated)

32287.5 Da

IEP (calculated)

8.439

GRAVY (calculated)

-0.264

Length

292 amino acids

Sequence
(BLAST)

001: MAAISFSSVH ASPSPRVFRP QSSRYTPGLT LYSRFTLSFS FPSLSSTLRV DTFRSRRPFL IASAVKSLGE TEQLPIAEAE SIPAESGVYA VYDKSDELQF
101: VGISRNIGAS VSTHVKSVPE LCGSVKVGIV EEPDKAVLTQ AWKSWIEEHI KVTGKVPPGN KSGNNTWVKQ TPRKKSDIRL TPGRHVELTV PLEELIDRLV
201: KENKVVAFIK GSRSAPQCGF SQRVVGILES QGVDYETVDV LDDDYNHGLR EKLKSYSNWP TFPQVFVKGE LLGGCDILTS MYENGELANM FK

Best Arabidopsis Sequence Match ( AT2G38270.1 )
(BLAST)

001: MAAITISSSL HASASPRVVR PHVSRNTPVI TLYSRFTPSF SFPSLSFTLR DTAPSRRRSF FIASAVKSLT ETELLPITEA DSIPSASGVY AVYDKSDELQ
101: FVGISRNIAA SVSAHLKSVP ELCGSVKVGI VEEPDKAVLT QAWKLWIEEH IKVTGKVPPG NKSGNNTFVK QTPRKKSDIR LTPGRHVELT VPLEELIDRL
201: VKESKVVAFI KGSRSAPQCG FSQRVVGILE SQGVDYETVD VLDDEYNHGL RETLKNYSNW PTFPQIFVKG ELVGGCDILT SMYENGELAN ILN

Arabidopsis Description

GRXS16Bifunctional monothiol glutaredoxin-S16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H7F6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.