Factsheet for Os12t0175500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16486	Sorghum	cytosol	47.37	91.84
EES09081	Sorghum	plastid	83.51	82.93
TraesCS5B01G152900.1	Wheat	plastid	82.81	81.66
Zm00001d005094_P001	Maize	plastid	82.11	80.41
TraesCS5D01G159600.1	Wheat	plastid	81.4	80.28
Zm00001d044606_P001	Maize	plastid	81.75	79.79
HORVU5Hr1G048120.8	Barley	cytosol, plastid	81.75	73.04
VIT_08s0105g00490.t01	Wine grape	plastid	65.26	62.63
Solyc09g005620.2.1	Tomato	plastid	62.46	60.96
PGSC0003DMT400011370	Potato	plastid	63.16	60.81
CDY07744	Canola	plastid	61.4	59.93
TraesCS5A01G154700.1	Wheat	mitochondrion	81.75	59.9
CDY14473	Canola	plastid	60.35	59.72
Bra000047.1-P	Field mustard	plastid	61.05	59.18
AT2G38270.1	Thale cress	plastid	59.3	57.68
KRH65709	Soybean	nucleus, plastid	59.65	57.63
GSMUA_Achr5P14210_001	Banana	plastid	63.86	56.0
KRH75953	Soybean	nucleus	57.89	51.56
Os03t0851200-01	Rice	nucleus, plastid	22.81	38.69
Os01t0174900-01	Rice	mitochondrion	18.6	28.65
Os01t0530400-01	Rice	mitochondrion	18.25	28.11
Os10t0500700-01	Rice	cytosol	24.91	14.46

Protein Annotations

Gene3D:3.40.1440.10	Gene3D:3.40.30.10	MapMan:35.1	EntrezGene:4351647	ProteinID:ABA96598.1	EMBL:AK060940
ProteinID:BAF29310.1	ProteinID:BAT16102.1	ProteinID:EAZ19818.1	InterPro:GIY-YIG_endonuc_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900
GO:GO:0045454	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:GRX_PICOT-like
InterPro:Glutaredoxin	InterPro:IPR002109	InterPro:IPR035901	InterPro:Monothiol_GRX-rel	EnsemblPlantsGene:Os12g0175500	EnsemblPlants:Os12t0175500-01
PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF45	UniProt:Q2QX01	SUPFAM:SSF52833
TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI0000681951	RefSeq:XP_015618330.1	SEG:seg	:

Description

GLUTAREDOXIN 27Similar to Glutaredoxin-like protein. (Os12t0175500-01)

Coordinates

chr12:-:3849391..3853357

Molecular Weight (calculated)

30591.5 Da

IEP (calculated)

8.495

GRAVY (calculated)

-0.260

Length

285 amino acids

Sequence
(BLAST)

001: MATSSAAAAL RLPASQLPLS ARPSSSSTLR FPPRRPARRG GLAVSAFTKL SEASPVAIPP EPAQPLPDEE ALPPKPGVYG VYDPAGELQF VGISRNVRAS
101: VEGHRRKVPA DLCGSVKVSI ADEETPDRTV LTNAWKSWLE EHITATGKAP PGNVAGNHTW VGPPQRPPDL RLTPGRHVQL TVPLEQLIDR LVKDNKVVAF
201: IKGSRSAPQC GFSQRVVGIL ESHGVDFVTV DVLDEEHNHG LRETLKTYSN WPTFPQVFVG GELVGGCDIV SSMAEKGELA ALFKK

Best Arabidopsis Sequence Match ( AT2G38270.1 )
(BLAST)

001: MAAITISSSL HASASPRVVR PHVSRNTPVI TLYSRFTPSF SFPSLSFTLR DTAPSRRRSF FIASAVKSLT ETELLPITEA DSIPSASGVY AVYDKSDELQ
101: FVGISRNIAA SVSAHLKSVP ELCGSVKVGI VEEPDKAVLT QAWKLWIEEH IKVTGKVPPG NKSGNNTFVK QTPRKKSDIR LTPGRHVELT VPLEELIDRL
201: VKESKVVAFI KGSRSAPQCG FSQRVVGILE SQGVDYETVD VLDDEYNHGL RETLKNYSNW PTFPQIFVKG ELVGGCDILT SMYENGELAN ILN

Arabidopsis Description

GRXS16Bifunctional monothiol glutaredoxin-S16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H7F6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.