Factsheet for VIT_08s0105g00490.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0108g00830.t01
VIT_16s0098g00600.t01
VIT_17s0000g06190.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38270.1	VIT_14s0108g00830.t01	AT3G28910.1	21798944
AT2G38270.1	VIT_17s0000g06190.t01	AT3G28910.1	21798944
AT2G38270.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16486	Sorghum	cytosol	39.06	78.91
PGSC0003DMT400011370	Potato	plastid	71.38	71.62
Solyc09g005620.2.1	Tomato	plastid	70.03	71.23
KRH65709	Soybean	nucleus, plastid	68.69	69.15
CDY14473	Canola	plastid	63.64	65.62
Os12t0175500-01	Rice	plastid	62.63	65.26
AT2G38270.1	Thale cress	plastid	64.31	65.19
CDY07744	Canola	plastid	63.97	65.07
Bra000047.1-P	Field mustard	plastid	64.31	64.97
KRH75953	Soybean	nucleus	68.01	63.12
EES09081	Sorghum	plastid	60.94	63.07
TraesCS5B01G152900.1	Wheat	plastid	59.6	61.25
TraesCS5D01G159600.1	Wheat	plastid	59.26	60.9
Zm00001d005094_P001	Maize	plastid	59.6	60.82
Zm00001d044606_P001	Maize	plastid	59.6	60.62
GSMUA_Achr5P14210_001	Banana	plastid	62.63	57.23
HORVU5Hr1G048120.8	Barley	cytosol, plastid	59.26	55.17
TraesCS5A01G154700.1	Wheat	mitochondrion	58.92	44.99
VIT_09s0002g06040.t01	Wine grape	mitochondrion	17.85	31.18
VIT_10s0597g00030.t01	Wine grape	cytosol	23.23	14.02

Protein Annotations

EntrezGene:100245544	wikigene:100245544	Gene3D:3.40.1440.10	Gene3D:3.40.30.10	MapMan:35.1	ProteinID:CBI22808
ProteinID:CBI22808.3	UniProt:D7SY25	EMBL:FN595245	InterPro:GIY-YIG_endonuc_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109
InterPro:IPR035901	EntrezGene:LOC100245544	wikigene:LOC100245544	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354
PANTHER:PTHR10293	PANTHER:PTHR10293:SF45	SUPFAM:SSF52833	TIGR:TC52743	InterPro:Thioredoxin-like_sf	UniParc:UPI00015CBC13
ArrayExpress:VIT_08s0105g00490	EnsemblPlantsGene:VIT_08s0105g00490	EnsemblPlants:VIT_08s0105g00490.t01	unigene:Vvi.1064	RefSeq:XP_002263823	RefSeq:XP_002263823.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:7822441..7828260

Molecular Weight (calculated)

32514.9 Da

IEP (calculated)

7.989

GRAVY (calculated)

-0.213

Length

297 amino acids

Sequence
(BLAST)

001: MATISLSSIH TSPSSLRLLS SYSSQNTPTL SFYSHTKPSL SFSSVSLKPI TTARSRTLTV VSAFGKLSET EPIPLPPAPE EIAGKFPSES GVYAVYDQSD
101: VLQFIGITRS IAASVLAHRK SVPELCCSVK VAVVDEPDRT ALTQAWKSWM EEHIGATGKI PPGNESGNTT WVRQPPKKKP DLRLTPGRHT QLTVPLETLI
201: DRLVKENKVV AFIKGSRSAP LCGFSQRVVG ILESEGVDYE SLDVLDEEHN YGLRETLKKY SNWPTFPQIF VNGELVGGCD ILTSMHEKGE LVGLFKK

Best Arabidopsis Sequence Match ( AT2G38270.1 )
(BLAST)

001: MAAITISSSL HASASPRVVR PHVSRNTPVI TLYSRFTPSF SFPSLSFTLR DTAPSRRRSF FIASAVKSLT ETELLPITEA DSIPSASGVY AVYDKSDELQ
101: FVGISRNIAA SVSAHLKSVP ELCGSVKVGI VEEPDKAVLT QAWKLWIEEH IKVTGKVPPG NKSGNNTFVK QTPRKKSDIR LTPGRHVELT VPLEELIDRL
201: VKESKVVAFI KGSRSAPQCG FSQRVVGILE SQGVDYETVD VLDDEYNHGL RETLKNYSNW PTFPQIFVKG ELVGGCDILT SMYENGELAN ILN

Arabidopsis Description

GRXS16Bifunctional monothiol glutaredoxin-S16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H7F6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.