Factsheet for Bra000047.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007884.1-P
Bra016263.1-P
Bra017974.1-P
Bra025361.1-P
Bra033067.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38270.1	Bra007884.1-P	AT1G69810.1	21798944
AT2G38270.1	Bra016263.1-P	AT1G69810.1	21798944
AT2G38270.1	Bra025361.1-P	AT3G28910.1	21798944
AT2G38270.1	Bra033067.1-P	AT3G28910.1	21798944
AT2G38270.1	Bra017974.1-P	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07744	Canola	plastid	97.62	98.29
CDY14473	Canola	plastid	96.26	98.26
AT2G38270.1	Thale cress	plastid	87.07	87.37
EES16486	Sorghum	cytosol	36.73	73.47
VIT_08s0105g00490.t01	Wine grape	plastid	64.97	64.31
Solyc09g005620.2.1	Tomato	plastid	63.61	64.04
PGSC0003DMT400011370	Potato	plastid	63.27	62.84
Os12t0175500-01	Rice	plastid	59.18	61.05
KRH65709	Soybean	nucleus, plastid	60.54	60.34
EES09081	Sorghum	plastid	55.78	57.14
TraesCS5D01G159600.1	Wheat	plastid	55.78	56.75
TraesCS5B01G152900.1	Wheat	plastid	55.78	56.75
Zm00001d005094_P001	Maize	plastid	55.78	56.36
Zm00001d044606_P001	Maize	plastid	55.44	55.82
KRH75953	Soybean	nucleus	60.54	55.62
HORVU5Hr1G048120.8	Barley	cytosol, plastid	56.46	52.04
GSMUA_Achr5P14210_001	Banana	plastid	55.1	49.85
TraesCS5A01G154700.1	Wheat	mitochondrion	55.44	41.9
Bra007110.1-P	Field mustard	plastid	20.75	35.06
Bra003199.1-P	Field mustard	plastid	20.41	33.15
Bra021125.1-P	Field mustard	mitochondrion	17.69	31.14
Bra027220.1-P	Field mustard	mitochondrion	18.03	30.99
Bra029532.1-P	Field mustard	cytosol	18.03	15.63
Bra000810.1-P	Field mustard	cytosol	22.11	13.66

Protein Annotations

Gene3D:3.40.1440.10	Gene3D:3.40.30.10	MapMan:35.1	EnsemblPlantsGene:Bra000047	EnsemblPlants:Bra000047.1	EnsemblPlants:Bra000047.1-P
InterPro:GIY-YIG_endonuc_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin
InterPro:IPR002109	InterPro:IPR035901	UniProt:M4C769	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354
PANTHER:PTHR10293	PANTHER:PTHR10293:SF45	SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI000254008E
SEG:seg	:	:	:	:	:

Description

AT2G38270 (E=3e-130) CXIP2, ATGRX2 | CXIP2 (CAX-INTERACTING PROTEIN 2); electron carrier/ protein disulfide oxidoreductase

Coordinates

chrA03:-:9022898..9024487

Molecular Weight (calculated)

32389.6 Da

IEP (calculated)

8.067

GRAVY (calculated)

-0.271

Length

294 amino acids

Sequence
(BLAST)

001: MAAISFSSVH ASPSPRVFRP QTSRNTPGLT LYSRFTPSFS ISFPSLSSTL RVDTVRSRRP FLIASAVKSL GETEQLPIAE AESIPAESGV YAVYDKSDEL
101: QFVGISRNIG ASVSTHVKSV PELCGSVKVG IVEEPDKAVL TQAWKSWIEE HIKVTGKVPP GNKSGNNTWV KQTPRKKSDI RLTPGRHVEL TVPLEELIDR
201: LVKENKVVAF IKGSRSAPQC GFSQRVVGIL ESQGVDYETV DVLDDDYNHG LREKLKSYSN WPTFPQVFVK GELLGGCDIL TSMYENGELA DMFK

Best Arabidopsis Sequence Match ( AT2G38270.1 )
(BLAST)

001: MAAITISSSL HASASPRVVR PHVSRNTPVI TLYSRFTPSF SFPSLSFTLR DTAPSRRRSF FIASAVKSLT ETELLPITEA DSIPSASGVY AVYDKSDELQ
101: FVGISRNIAA SVSAHLKSVP ELCGSVKVGI VEEPDKAVLT QAWKLWIEEH IKVTGKVPPG NKSGNNTFVK QTPRKKSDIR LTPGRHVELT VPLEELIDRL
201: VKESKVVAFI KGSRSAPQCG FSQRVVGILE SQGVDYETVD VLDDEYNHGL RETLKNYSNW PTFPQIFVKG ELVGGCDILT SMYENGELAN ILN

Arabidopsis Description

GRXS16Bifunctional monothiol glutaredoxin-S16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H7F6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.