Factsheet for PGSC0003DMT400040652

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g075010.2.1	Tomato	mitochondrion	93.96	87.92
VIT_02s0087g00390.t01	Wine grape	mitochondrion	70.33	65.14
KRH39729	Soybean	plastid	64.56	60.1
Bra023195.1-P	Field mustard	nucleus	59.89	60.06
KRH76418	Soybean	nucleus	47.53	59.66
GSMUA_AchrUn_...	Banana	cytosol	50.55	58.04
Bra038426.1-P	Field mustard	plastid	60.44	57.29
CDY12415	Canola	plastid	58.24	56.99
CDY27147	Canola	plastid	60.16	56.74
CDY12304	Canola	plastid	59.89	54.5
AT1G31500.7	Thale cress	mitochondrion	60.71	52.37
EES19469	Sorghum	plastid	55.49	51.4
Os05t0389500-02	Rice	mitochondrion	54.4	50.9
CDY62302	Canola	mitochondrion, plastid	59.89	50.7
TraesCS1D01G243100.1	Wheat	mitochondrion	54.67	50.25
TraesCS1A01G243100.1	Wheat	mitochondrion	54.4	50.0
TraesCS1B01G254600.1	Wheat	mitochondrion	54.4	50.0
Zm00001d038091_P006	Maize	plastid	55.77	49.39
AT1G31530.1	Thale cress	cytosol	31.32	40.28
PGSC0003DMT400014627	Potato	nucleus	21.98	18.02
PGSC0003DMT400029795	Potato	cytosol	28.02	16.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400040652	EnsemblPlantsGene:PGSC0003DMG401015717	EntrezGene:102585458	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
PANTHER:PTHR12121	PANTHER:PTHR12121:SF42	PFAM:PF03372	PGSC:PGSC0003DMG401015717	RefSeq:XP_006363873.1	RefSeq:XP_006363874.1
SUPFAM:SSF56219	UniParc:UPI000296D7D8	UniProt:M1BA66	MapMan:35.1	:	:

Description

RNA exonuclease NGL1 [Source:PGSC_GENE;Acc:PGSC0003DMG401015717]

Coordinates

chr8:-:46358825..46364448

Molecular Weight (calculated)

39958.1 Da

IEP (calculated)

4.814

GRAVY (calculated)

-0.304

Length

364 amino acids

Sequence
(BLAST)

001: MSTTPAPLSP KFVPAEKSGI TSVSKSDGFK FSLVSYNILA QAYVKGDLFP HSPGPCLKWK ARSQAILTVL KSLGADFLCL QELDEYDSFY KRNIESVGYS
101: SIYVQRSGQK RDGCGIFYKQ DSAELVIEEK IEYNDLVPSN QDDTSSEDKE ENLPAGGNKK SASKDAGLKN RQANLGDLND PCVRFKRDCV GIMAAFRLKD
201: PSHLIIVANT HIYWDPELAD VKLAQARYLL SRLAQFKLLV SDKFDCSPSV VVTGDFNSLP GSQVYQYLMS GSSEAGTLPE ISDDVPIPLC SAYASTRGEP
301: HFTNYTPGFT GTLDYILFSP SGGIKPVSYL ELPEPEASDV QGGLPNYYHP SDHLPIGAEF EIIQ

Best Arabidopsis Sequence Match ( AT1G31500.5 )
(BLAST)

001: MFSSTTLHHL PRPNLLLPRK VISRRMSTNP AIEPKVRKFE SVEGVDIGSR NKSDGIRFRL VSYNILAQVY VKSALLPHSP PACLKWKARS HAILSVLKNL
101: QADFFCLQEV DEYDSFYRNN MDSLGYSGIY IQRTGQRKRD GCAIFYKPSC AELVTKERIE YNDLVDSIKA DSVSCSEQKI ETSNEGKDSR KDSRDLNDPL
201: VRLKRDCVGI MAAFRINKPF QHIVIVANTH LYWDPELADV KLAQAKYLLS RLAQFKTLIS DEFECTPSLL LAGDFNSIPG DMVYSYLVSG NAKPTETIEE
301: EEAPVPLSSV YEVTRGEPKF TNCTPGFTNT LDYIFISPSD FIKPVSILQL PEPDSPDVVG FLPNHHHPSD HLPIGAEFEI RRE

Arabidopsis Description

DNAse I-like superfamily protein [Source:TAIR;Acc:AT1G31500]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.