Factsheet for VIT_02s0087g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040652	Potato	cytosol, plastid	65.14	70.33
KRH39729	Soybean	plastid	68.19	68.54
Bra038426.1-P	Field mustard	plastid	63.61	65.1
CDY12415	Canola	plastid	61.58	65.05
Bra023195.1-P	Field mustard	nucleus	60.05	65.01
CDY27147	Canola	plastid	63.36	64.51
Solyc08g075010.2.1	Tomato	mitochondrion	63.61	64.27
KRH76418	Soybean	nucleus	47.33	64.14
GSMUA_AchrUn_...	Banana	cytosol	48.6	60.25
CDY12304	Canola	plastid	61.32	60.25
AT1G31500.7	Thale cress	mitochondrion	63.36	59.0
CDY62302	Canola	mitochondrion, plastid	60.81	55.58
Os05t0389500-02	Rice	mitochondrion	53.69	54.24
EES19469	Sorghum	plastid	53.94	53.94
TraesCS1A01G243100.1	Wheat	mitochondrion	53.94	53.54
TraesCS1D01G243100.1	Wheat	mitochondrion	53.94	53.54
TraesCS1B01G254600.1	Wheat	mitochondrion	53.44	53.03
Zm00001d038091_P006	Maize	plastid	53.94	51.58
VIT_17s0000g04030.t01	Wine grape	plastid	23.92	21.32
VIT_17s0000g03760.t01	Wine grape	nucleus	22.14	18.79
VIT_18s0001g05590.t01	Wine grape	cytosol	21.12	18.08
VIT_08s0007g07020.t01	Wine grape	cytosol	27.74	18.08
VIT_04s0008g04720.t01	Wine grape	mitochondrion	21.63	10.81

Protein Annotations

ArrayExpress:VIT_02s0087g00390	EMBL:FN595769	EnsemblPlants:VIT_02s0087g00390.t01	EnsemblPlantsGene:VIT_02s0087g00390	EntrezGene:100256249	Gene3D:3.60.10.10
InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691	PANTHER:PTHR12121	PANTHER:PTHR12121:SF42	PFAM:PF03372
ProteinID:CBI29220	ProteinID:CBI29220.3	RefSeq:XP_010644675.1	SEG:seg	SUPFAM:SSF56219	UniParc:UPI0001BE32F9
UniProt:D7TFE7	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2:-:17687721..17713372

Molecular Weight (calculated)

43528.2 Da

IEP (calculated)

5.748

GRAVY (calculated)

-0.310

Length

393 amino acids

Sequence
(BLAST)

001: MLLKGGVFVL PRFSPSFSIS SRIRLSKMST AAAPIIPKFI SVEGVDINSR SIPDGFRFSL VSYNILAQVY VKSSLFPHSP SPCLKWKARS QAILTVLRNL
101: GADFLCLQEV DEYDSFYKGN MDSNGYSSIY VQRSGQKHDG CGIFYKHNSA ELVLEEKIEY NDLVDLNDDG SYSNDRHCDT PASANSDAEP KKGSSPQNTT
201: EERGDPNDPR VRLKRDCVGI MAAFRLKDPS HHLVIVANTH LYWDPEWADV KLAQAKYLLS RLAQFKTVVS DKFECTPSVL VAGDFNSTPG DKVYQYLVSG
301: NSSVPQLECL DGLPIPLCSV YDFTRGEPPF TNCTPDFTNT LDYIFFSPSG HIKPVSFLEL PEPDSSDVAG GLPNHHHPSD HLPIGAEFKV TGE

Best Arabidopsis Sequence Match ( AT1G31500.1 )
(BLAST)

001: MFSSTTLHHL PRPNLLLPSS RVCRKVISRR MSTNPAIEPK VRKFESVEGV DIGSRNKSDG IRFRLVSYNI LAQVYVKSAL LPHSPPACLK WKARSHAILS
101: VLKNLQADFF CLQEVDEYDS FYRNNMDSLG YSGIYIQRTG QRKRDGCAIF YKPSCAELVT KERIEYNDLV DSIKADSVSC SEQKIETSNE GKDSRKDSRD
201: LNDPLVRLKR DCVGIMAAFR INKPFQHIVI VANTHLYWDP ELADVKLAQA KYLLSRLAQF KTLISDEFEC TPSLLLAGDF NSIPGDMVYS YLVSGNAKPT
301: ETIEEEEAPV PLSSVYEVTR GEPKFTNCTP GFTNTLDYIF ISPSDFIKPV SILQLPEPDS PDVVGFLPNH HHPSDHLPIG AEFEIRRE

Arabidopsis Description

DNAse I-like superfamily protein [Source:TAIR;Acc:AT1G31500]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.