Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g07020.t01 | Wine grape | cytosol | 44.44 | 33.83 |
| VIT_02s0087g00390.t01 | Wine grape | mitochondrion | 18.08 | 21.12 |
| VIT_17s0000g03760.t01 | Wine grape | nucleus | 18.95 | 18.79 |
| VIT_17s0000g04030.t01 | Wine grape | plastid | 16.78 | 17.46 |
| VIT_04s0008g04720.t01 | Wine grape | mitochondrion | 19.17 | 11.2 |
Protein Annotations
| ArrayExpress:VIT_18s0001g05590 | EMBL:FN595227 | EnsemblPlants:VIT_18s0001g05590.t01 | EnsemblPlantsGene:VIT_18s0001g05590 | Gene3D:3.60.10.10 | InterPro:Endo/exonu/phosph_ase_sf |
| InterPro:Endo/exonuclease/phosphatase | InterPro:IPR036691 | PANTHER:PTHR12121 | PANTHER:PTHR12121:SF29 | PFAM:PF03372 | ProteinID:CCB45568 |
| ProteinID:CCB45568.1 | SEG:seg | SUPFAM:SSF56219 | TIGR:TC56088 | UniParc:UPI0002108106 | UniProt:F6H0P9 |
| MapMan:16.8.2.1.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr18:-:4377588..4386070
Molecular Weight (calculated)
51560.5 Da
IEP (calculated)
5.579
GRAVY (calculated)
-0.229
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVRESYYCS KQCFLDLWPQ HKARHCLAAE SVSKASNDCY SLMGRLRSSG SWTDFGIDSI FVESETLVER EGKTWIKVGS SETYVPSMDD FGFCLMFESL
101: AIDCSLGFPL SEIKSIMTDP VIIPPHPCPR HMIQIQHLKE PRNIVFESQS SNADTFSVLS YNILSDIYAS RSAHVKCPGW ALAWEYRRKN LLLEITGYDA
201: DIICLQEVYT ANQFISDGCA TFFRHDRFKE ITKYELEFDK TALSVVEGLE PGQRTEGQIR LMKANTHIYA NPNLPDVKLC QVASLVNGLE KIAQSQIPIL
301: ICGDMNSLPG SDPHKFLVTG RICPVSSKET ADPLGIYNLL KLQHSIPLVS AYSSLLCSGR VKEDEKKKMN QETKEPVFTN LSGGNSSTLD YIFHTENNLE
401: VEGLLELLNS ETVGEALPSP LWSSDHIALM ANFRFKQAFC WEPHSPPPQN PWHQAAPLS
101: AIDCSLGFPL SEIKSIMTDP VIIPPHPCPR HMIQIQHLKE PRNIVFESQS SNADTFSVLS YNILSDIYAS RSAHVKCPGW ALAWEYRRKN LLLEITGYDA
201: DIICLQEVYT ANQFISDGCA TFFRHDRFKE ITKYELEFDK TALSVVEGLE PGQRTEGQIR LMKANTHIYA NPNLPDVKLC QVASLVNGLE KIAQSQIPIL
301: ICGDMNSLPG SDPHKFLVTG RICPVSSKET ADPLGIYNLL KLQHSIPLVS AYSSLLCSGR VKEDEKKKMN QETKEPVFTN LSGGNSSTLD YIFHTENNLE
401: VEGLLELLNS ETVGEALPSP LWSSDHIALM ANFRFKQAFC WEPHSPPPQN PWHQAAPLS
001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL
Arabidopsis Description
CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.