Factsheet for VIT_04s0008g04720.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16019	Soybean	plastid	49.75	45.89
AT5G11350.4	Thale cress	nucleus	43.38	45.17
CDX97099	Canola	plastid	42.11	44.02
Bra008968.1-P	Field mustard	mitochondrion, plastid	42.37	43.99
CDX69764	Canola	mitochondrion, plastid	42.24	43.92
Solyc08g067420.2.1	Tomato	plastid	47.71	42.96
VIT_17s0000g04030.t01	Wine grape	plastid	20.74	36.96
GSMUA_Achr1P14560_001	Banana	nucleus	35.75	36.45
VIT_17s0000g03760.t01	Wine grape	nucleus	20.87	35.42
KRH05096	Soybean	cytosol	22.26	34.31
EES03263	Sorghum	mitochondrion	35.11	31.65
Zm00001d044447_P007	Maize	mitochondrion	22.65	31.12
Os01t0610600-01	Rice	mitochondrion	35.37	30.79
TraesCS3B01G248600.1	Wheat	mitochondrion	35.62	30.57
TraesCS3D01G233900.2	Wheat	mitochondrion	35.37	30.35
TraesCS3A01G218500.4	Wheat	mitochondrion	34.86	30.04
VIT_02s0087g00390.t01	Wine grape	mitochondrion	10.81	21.63
VIT_08s0007g07020.t01	Wine grape	cytosol	15.01	19.57
VIT_18s0001g05590.t01	Wine grape	cytosol	11.2	19.17
CDX97100	Canola	plastid	0.13	0.14

Protein Annotations

EntrezGene:100254276	wikigene:100254276	Gene3D:3.60.10.10	MapMan:35.1	EMBL:AM461480	ProteinID:CAN65720
ProteinID:CAN65720.1	ProteinID:CBI20971	ProteinID:CBI20971.3	UniProt:D7SUM2	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
EMBL:FN595231	InterPro:IPR036691	EntrezGene:LOC100254276	wikigene:LOC100254276	PFAM:PF03372	PANTHER:PTHR12121
PANTHER:PTHR12121:SF48	SUPFAM:SSF56219	UniParc:UPI0001BE1959	ArrayExpress:VIT_04s0008g04720	EnsemblPlantsGene:VIT_04s0008g04720	EnsemblPlants:VIT_04s0008g04720.t01
RefSeq:XP_002282223	RefSeq:XP_002282223.2	RefSeq:XP_019075070.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:4165846..4177427

Molecular Weight (calculated)

89395.5 Da

IEP (calculated)

4.764

GRAVY (calculated)

-0.788

Length

786 amino acids

Sequence
(BLAST)

001: MSSRATYRSS RNRWRRGFSN RSDAGESGEL VTGDSHFRSV RDANLGLRQG ERRNFNESGF QPQSYNPRQP FPRNQPFRRP PPFNPNQPFR QSPAFNPNQP
101: FQQPPPFNPN QRFRQPPPFN PNQPFNQNHR FQQPQQFQPR PTRPLDYRNW EYSEAGPSSH CERFTVLSYN ILADYLAVNQ RSRLYFHIPR HMLDWEWRKR
201: NIIFELGLWS ADVMCFQEVD RFGDLEEELK LRGYTGIWKM RTGDPVDGCA IFWRASRFKL LHEECIEFNK LGLRDNVAQI CVLESINQNY SWSTSALPAS
301: STGSNKVVIC NIHVLYNPRR GEIKLGQVRA LLDKAHAVSK IWNDAPIVIC GDFNCTPKSP LYNFISEQKL DLSGLDRDKV SGQASAEIRA PRQFSPNPRI
401: QLTDNSAQGL TMNDVREVGA KDSDSLLEIQ KQTYPDSNVG NVASMDNLSQ AQCINTVLHV DKSCTNGQHE NDTRAPSDEM IKETQQEKVG GFENETEPTA
501: YDPVDDSKEN QSISLIEGEA VVDQVNGGIW ENTPPAASLH EETYSSDMIE RRQGERITVI SNPVHQFFSE HSQPGVDDEK DTPSTPYEIN ISDASTSFDI
601: VLDKQLENLT LDEADEDTEE NGNLGEDCST FLSELNKTEE TFPSDFGQSV RSDQILDDFS PSIEPEPFEM EISAYDPSVW TPMEIETATG NADCTHLEHP
701: LKLKSTYTEV EDRSGTKDSN GEPLVTSYNR CFLGTVDYIW RSEGLKTIRA LAPIPKQAMQ WTPGFPTKKW GSDHIALATE LAFTKD

Best Arabidopsis Sequence Match ( AT5G11350.1 )
(BLAST)

001: MRRSRFVAQV FSDVTFADAS TISAPIFTMS TRAPYRGARG RGRGRGGRSF SDRPYNDDAG RDQFVTGDSH FQSVHDANFR FRHGEPYRQH QPPLDQRQQP
101: PFNQNYEFRP PPPSRGQWQQ FRQPNQFPSN QNYAACPPPP FYQNQMSRPP PQQSFRQRPR SKPSDYREWE YAKTPPSPGS EKFVVLSYNI LADYLANDHW
201: RSLYFHIPRN MLSWGWRKSK LVFELSLWSA DIMCLQEVDK FQDLEEEMKH RGYSAIWKMR TGNAVDGCAI FWRSNRFKLV HEESIQFNQL GLRDNVAQIC
301: VLETLLTSHT KENETPPPES SAGSHRVVIC NIHVLFNPKR GDFKLGQVRT LLDKAHAVSK LWDDAPIVLC GDFNCTPKSP LYNFISDRKL DLSGLARDKV
401: SGQVSAEFRP PRPENYTTRY QSANKSPQGQ VQPPNLITNA HMENNSNIDV GTAPSEKTSE LPCGDTILAG HEATSSSDQV LPCENMASDC QFGIENRKPD
501: DSGNLSTAED LSSLTISDTE PQHASSARED LNTDRSVSSG LSETEQTPEE ICSSDQDISS SLSTKVDTFV AEMKLDGLKL DEPVVFAQDE ESLGEDGETF
601: LAKLHDNNEN LSQKGELVSE VPLKWSSEAL NSDKITYSPS SWTPMEIATA TGDPERTTVE HALELKSTYS EVEGQANTRD ENGEPVVTSY HRCFMGTVDY
701: IWRSEGLQTV RVLAPIPKQA MQWTPGFPTP KWGSDHIALV SELAFCSSKT LPKS

Arabidopsis Description

DNAse I-like superfamily protein [Source:TAIR;Acc:AT5G11350]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.