Factsheet for Solyc08g067420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g04720.t01	Wine grape	mitochondrion	42.96	47.71
AT5G11350.4	Thale cress	nucleus	37.8	43.71
CDX97099	Canola	plastid	37.34	43.35
CDX69764	Canola	mitochondrion, plastid	37.23	42.99
Bra008968.1-P	Field mustard	mitochondrion, plastid	37.11	42.8
KRH16019	Soybean	plastid	41.47	42.49
Solyc03g119710.2.1	Tomato	plastid	18.79	37.79
Solyc03g119570.1.1	Tomato	nucleus	17.18	35.89
GSMUA_Achr1P14560_001	Banana	nucleus	29.67	33.59
EES03263	Sorghum	mitochondrion	32.88	32.91
Zm00001d044447_P007	Maize	mitochondrion	21.53	32.87
KRH05096	Soybean	cytosol	19.13	32.75
Os01t0610600-01	Rice	mitochondrion	32.07	31.01
TraesCS3B01G248600.1	Wheat	mitochondrion	31.16	29.69
TraesCS3D01G233900.2	Wheat	mitochondrion	31.04	29.59
TraesCS3A01G218500.4	Wheat	mitochondrion	30.47	29.17
Solyc08g075010.2.1	Tomato	mitochondrion	11.11	24.94
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	14.55	21.38
Solyc10g078950.1.1	Tomato	cytosol	13.52	21.03
CDX97100	Canola	plastid	0.46	0.58

Protein Annotations

EnsemblPlants:Solyc08g067420.2.1	EnsemblPlantsGene:Solyc08g067420.2	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
PANTHER:PTHR12121	PANTHER:PTHR12121:SF48	PFAM:PF03372	SEG:seg	SUPFAM:SSF56219	UniParc:UPI000276C284
UniProt:K4CLW8	MapMan:35.1	:	:	:	:

Description

Carbon catabolite repressor protein 4 homolog 6 [Source:Projected from Arabidopsis thaliana (AT5G11350) UniProtKB/Swiss-Prot;Acc:Q8VYU4]

Coordinates

chr8:-:56461240..56476802

Molecular Weight (calculated)

97955.3 Da

IEP (calculated)

6.046

GRAVY (calculated)

-0.712

Length

873 amino acids

Sequence
(BLAST)

001: MKHSAPSRHL IAAAAFTDTA SAAASATMSS AQSFRGGRGR GRRNFSHRPS GERSEDDIVT GDSHFNSVRE TNRNLRPSPN FRPFRPRAPS PNIHPTHHNY
101: GQLPHPQPRQ QFHPNQQSYR AMPPPAGFYQ NQQFNRAVPQ PPLRPQYYQN QQLNRPNFYE NQKFNRPNFY ENQPFRPRPL PPKALNFRNW EYARPGPPPH
201: CERFTVLSYN ILADYLANDH QRKLYFHIPQ HILDWEWRKR SILSELGWWS ADILCLQEVD RFQELEAELK LRGYSGIWKR RTGDPADGCA IFWHASRFKL
301: VHEEFVEFKK FGLRDNVAQI CVFESLGQQN KSSPAPLAST GHSSKVVICN THVLFNPKRG DIKLGQVRVL LDKAGGVSKL WDNAPIVICG DFNSTPKSPL
401: YNYLAEERLD LSEVPRDKVS GQESATIYTV KHSFNASARH QDAVNSSQSS EVASEREVKD NKMASAEQKF DTREKDSGTG SSACTLSQPQ SSVEYEPGIS
501: CMVISCSEST ADLPRVIHVE GTSHEANSLE SCQEDEYDKD SESGYNKADP NATSTSSHKN FVAEVRSGID SERVKDGQSN VGDFGSENVL SIHRPIIPHC
601: SDVSSTGLFS DSSDVHEVSL PESSESVSSI GKESSPKISR ELKNSYTETC FDVLLDEKMA NLSLSVVSEG TKEDELLVEN REAFLSQLHD EAGSFPSDSD
701: QLQTTSLEEL DESVKKCDGS LELRSLSDEI AHDAPNLDSE VVDRENSIYD PSAWTPIDIE TATGNADCKL LEHNLKLTSA YREVELQDFS GTRDSTGEPE
801: VTSYHRLFMG TVDYIWRSEG LQTARVLAPI PKNAMQFVRG FPTKKWGSDH IALVSEFAFT SDISVHNTSV QKQ

Best Arabidopsis Sequence Match ( AT5G11350.1 )
(BLAST)

001: MRRSRFVAQV FSDVTFADAS TISAPIFTMS TRAPYRGARG RGRGRGGRSF SDRPYNDDAG RDQFVTGDSH FQSVHDANFR FRHGEPYRQH QPPLDQRQQP
101: PFNQNYEFRP PPPSRGQWQQ FRQPNQFPSN QNYAACPPPP FYQNQMSRPP PQQSFRQRPR SKPSDYREWE YAKTPPSPGS EKFVVLSYNI LADYLANDHW
201: RSLYFHIPRN MLSWGWRKSK LVFELSLWSA DIMCLQEVDK FQDLEEEMKH RGYSAIWKMR TGNAVDGCAI FWRSNRFKLV HEESIQFNQL GLRDNVAQIC
301: VLETLLTSHT KENETPPPES SAGSHRVVIC NIHVLFNPKR GDFKLGQVRT LLDKAHAVSK LWDDAPIVLC GDFNCTPKSP LYNFISDRKL DLSGLARDKV
401: SGQVSAEFRP PRPENYTTRY QSANKSPQGQ VQPPNLITNA HMENNSNIDV GTAPSEKTSE LPCGDTILAG HEATSSSDQV LPCENMASDC QFGIENRKPD
501: DSGNLSTAED LSSLTISDTE PQHASSARED LNTDRSVSSG LSETEQTPEE ICSSDQDISS SLSTKVDTFV AEMKLDGLKL DEPVVFAQDE ESLGEDGETF
601: LAKLHDNNEN LSQKGELVSE VPLKWSSEAL NSDKITYSPS SWTPMEIATA TGDPERTTVE HALELKSTYS EVEGQANTRD ENGEPVVTSY HRCFMGTVDY
701: IWRSEGLQTV RVLAPIPKQA MQWTPGFPTP KWGSDHIALV SELAFCSSKT LPKS

Arabidopsis Description

DNAse I-like superfamily protein [Source:TAIR;Acc:AT5G11350]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.