Factsheet for VIT_17s0000g04030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60320	Soybean	plastid	60.54	61.38
Solyc03g119710.2.1	Tomato	plastid	58.73	59.68
KRH41616	Soybean	cytosol	47.39	56.95
CDX92241	Canola	mitochondrion, nucleus, plastid	57.14	56.0
CDY24484	Canola	mitochondrion	57.14	56.0
AT3G18500.3	Thale cress	nucleus	55.56	54.57
Bra022326.1-P	Field mustard	mitochondrion, plastid	55.56	53.15
GSMUA_Achr7P12580_001	Banana	mitochondrion	38.1	52.17
Zm00001d045673_P003	Maize	plastid	46.03	45.82
Os06t0264900-00	Rice	plastid	31.52	45.42
EER89572	Sorghum	plastid	46.49	43.8
TraesCS7B01G114200.1	Wheat	plastid	43.99	43.5
TraesCS7A01G206900.2	Wheat	plastid	43.99	43.4
TraesCS7D01G209700.2	Wheat	plastid	43.76	43.18
HORVU0Hr1G020140.2	Barley	mitochondrion, nucleus	43.76	41.96
VIT_17s0000g03760.t01	Wine grape	nucleus	43.31	41.25
HORVU7Hr1G042150.3	Barley	nucleus, plastid	44.44	40.0
VIT_02s0087g00390.t01	Wine grape	mitochondrion	21.32	23.92
VIT_04s0008g04720.t01	Wine grape	mitochondrion	36.96	20.74
VIT_08s0007g07020.t01	Wine grape	cytosol	25.4	18.57
VIT_18s0001g05590.t01	Wine grape	cytosol	17.46	16.78

Protein Annotations

EntrezGene:100244123	wikigene:100244123	MapMan:35.1	ProteinID:CBI15424	ProteinID:CBI15424.3	UniProt:D7SIW3
InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	EMBL:FN594950	InterPro:IPR036691	EntrezGene:LOC100244123	wikigene:LOC100244123
PFAM:PF03372	PANTHER:PTHR12121	PANTHER:PTHR12121:SF48	SUPFAM:SSF56219	TIGR:TC65213	UniParc:UPI0001BE0C51
ArrayExpress:VIT_17s0000g04030	EnsemblPlantsGene:VIT_17s0000g04030	EnsemblPlants:VIT_17s0000g04030.t01	unigene:Vvi.10869	RefSeq:XP_002275530	RefSeq:XP_002275530.2
RefSeq:XP_010663575.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:+:4069034..4078202

Molecular Weight (calculated)

49779.1 Da

IEP (calculated)

7.291

GRAVY (calculated)

-0.334

Length

441 amino acids

Sequence
(BLAST)

001: MGCHAASWLC APMPTATTTT GSSKFYKSTT IFCCINSPAD STHPSPSVST GSSSRRWYNP LKKRPLDQPP EIVRHWIDSN HPFPSQETFT VVSYNILGDR
101: NAFKHRDLYS NVPFSYMKWD HRRRVICNEI IGRNPDIVCL QEVDKYFDLV SIMEKEGYAG SYKRRTGDTV DGCAMFWKAE KFRLLEGECI EFKQYGLRDN
201: VAQLSLFEMC EDESRKLLVG NIHVLYNPSR GDVKLGQIRF LSSRAHILSE KWGNVPVVLA GDFNSTPQSA MYQFLSSSEL NIMLYDRREL SGQRNCHPAQ
301: VFDVEREISS SFILMDRFLK GCWTDEEVKV ATGNADCHVV VHPLKLKSSY ATVKSSTRTR GFNGEPLATS YHSKFLGTVD YLWYSDGVVP TRVLDTLPVD
401: ILRGLGGLPC REVGSDHLAL ISEFAFAQGT EEGNNMTSMV T

Best Arabidopsis Sequence Match ( AT3G18500.3 )
(BLAST)

001: MRCVNRVDCS WSRPSEAYRI LPSGGHLSSG FHQCPLSSLS FRSSFVCCSS STSGPSDSNP ESSSNRSYSR RWQNPLPRRQ HPDQIPSSQI ARDWIDSDTT
101: PVSQALERFT VVSYNILGDG NSSYHRELYS NVSVPYLKWG YRKRLICEEL IRLNPDIISM QEVDKYFDLF SMMEKAGYAG SYKRRTGDNV DGCAMFWKAD
201: RFGVLERENI EFSQFGMRDN VAQLAVLELR KSNKSRKILL GNIHVLYNPN QGDVKLGQVR SLCSKAHLLS KKWGDIPIVL CGDFNSTPKS PLYNFLASSE
301: LNVMEHDKKE LSGQKNCRPT KVLETGSKSS NTITFRSFCS SWTKEEIRVA TGQENSYWAA HPLKLNSSYA SVKGSANTRD SVGEPLATSY HSKFLGTVDY
401: LWYSDGLLPA RVLDTLPIDV LCKTKGLPCQ ELGSDHLALV SEFVFEPDG

Arabidopsis Description

DNAse I-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J8R6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.